Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 AL122035.1-201ENST00000556640 550 ntTSL 2 BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 EGLN2-209ENST00000594140 991 ntTSL 2 BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 AL354718.3-201ENST00000616414 581 ntBASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 CR382287.1-201ENST00000623954 586 ntBASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 RHOXF1P1-202ENST00000635473 501 ntBASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 ARHGEF28-212ENST00000513042 6273 ntAPPRIS ALT2 TSL 5 BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 AC092850.2-201ENST00000623821 2697 ntBASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 TSPAN5-201ENST00000305798 3365 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 HYMAI-201ENST00000635591 3347 ntBASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 HHIP-202ENST00000434550 1770 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 RWDD4-205ENST00000510968 1551 ntTSL 4 BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 PAQR6-214ENST00000613336 1599 ntTSL 3 BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 FAM83C-201ENST00000374408 3145 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 AC012531.2-201ENST00000512206 1389 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 SLC10A3-203ENST00000393586 1893 ntTSL 5 BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 ATP10A-201ENST00000356865 6680 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 MTMR1-208ENST00000445323 4516 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 KAZN-201ENST00000361144 3838 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 KLF2P2-201ENST00000416807 1039 ntBASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 AC018467.1-201ENST00000421581 717 ntTSL 5 BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 ACTBP11-201ENST00000436287 1126 ntBASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 AL590640.2-201ENST00000457038 527 ntBASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 SEPT7P9-202ENST00000489259 743 ntTSL 3 BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 KRT18P25-201ENST00000508931 1278 ntBASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 AC126768.2-201ENST00000511693 718 ntTSL 3 BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 NME2-207ENST00000514264 850 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 AC078819.1-201ENST00000547454 765 ntBASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 AC012085.1-201ENST00000548270 765 ntBASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 AC009542.2-202ENST00000619004 1067 ntBASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 AC004834.1-204ENST00000640670 1055 ntTSL 5 BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 SIX6-201ENST00000327720 2787 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 SLC29A1-205ENST00000371740 2219 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 CTSB-228ENST00000533455 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 UBE3B-212ENST00000540230 1541 ntTSL 1 (best) BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 AP005117.1-202ENST00000581724 1908 ntBASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 EML2-203ENST00000536630 2791 ntAPPRIS ALT2 TSL 2 BASIC16.55■□□□□ 0.24
PAAF1Q9BRP4 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 AAMP-201ENST00000248450 1886 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 DARS-AS1-209ENST00000594219 1420 ntTSL 5 BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 IFT140-201ENST00000361339 2987 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 MLKL-201ENST00000306247 1781 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 PTGES3L-AARSD1-201ENST00000360221 1790 ntTSL 2 BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 SBNO2-202ENST00000438103 4537 ntAPPRIS ALT2 TSL 2 BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 RAB31-207ENST00000578921 4055 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 ATP2C1-224ENST00000533801 3690 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 SPDYE7P-201ENST00000355920 1064 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 SS18L1-202ENST00000370848 1238 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 FAM21FP-201ENST00000426241 1131 ntBASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 U82695.1-202ENST00000428676 700 ntTSL 2 BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 GEMIN4-202ENST00000437269 1182 ntTSL 2 BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 AC113383.1-201ENST00000514696 582 ntTSL 4 BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 AP002992.1-201ENST00000527519 491 ntTSL 3 BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 AC090502.1-201ENST00000549905 748 ntTSL 1 (best) BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 AC090502.1-204ENST00000551210 469 ntTSL 2 BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 LARP4-220ENST00000615080 856 ntTSL 5 BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 ADAM23-201ENST00000264377 6330 ntAPPRIS P2 TSL 1 (best) BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 RND2-202ENST00000587250 4147 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 AC092198.1-201ENST00000447651 2691 ntTSL 2 BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 C2CD4C-201ENST00000332235 3129 ntAPPRIS P1 TSL 2 BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
PAAF1Q9BRP4 ARL6IP1-201ENST00000304414 2409 ntAPPRIS P1 TSL 1 (best) BASIC16.54■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 61.2 ms