Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AL390755.1-201ENST00000623716 2027 ntBASIC16.94■□□□□ 0.3
CCDC42Q96M95 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC42Q96M95 KTN1-AS1-201ENST00000335142 1465 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC42Q96M95 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC42Q96M95 FAM149A-202ENST00000356371 2997 ntAPPRIS ALT2 TSL 5 BASIC16.94■□□□□ 0.3
CCDC42Q96M95 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC42Q96M95 KIRREL1-202ENST00000360089 3304 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC42Q96M95 ATP6V0D1-201ENST00000290949 1716 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC42Q96M95 AC232323.1-201ENST00000540724 2099 ntBASIC16.94■□□□□ 0.3
CCDC42Q96M95 REXO1L5P-201ENST00000622260 2098 ntBASIC16.94■□□□□ 0.3
CCDC42Q96M95 LTC4S-201ENST00000292596 666 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC42Q96M95 HINT1-201ENST00000304043 1081 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC42Q96M95 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC42Q96M95 EXOSC3-202ENST00000396521 768 ntTSL 2 BASIC16.94■□□□□ 0.3
CCDC42Q96M95 TPM4P1-201ENST00000436100 807 ntBASIC16.94■□□□□ 0.3
CCDC42Q96M95 AL591424.1-201ENST00000442569 1213 ntBASIC16.94■□□□□ 0.3
CCDC42Q96M95 AC243562.1-201ENST00000560672 389 ntBASIC16.94■□□□□ 0.3
CCDC42Q96M95 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC16.94■□□□□ 0.3
CCDC42Q96M95 KLK3-204ENST00000593997 1035 ntTSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC42Q96M95 C6orf120-201ENST00000332290 2667 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
CCDC42Q96M95 AC026748.1-201ENST00000624349 3251 ntBASIC16.94■□□□□ 0.3
CCDC42Q96M95 NRBF2-201ENST00000277746 1853 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC42Q96M95 C9orf139-202ENST00000623196 4990 ntTSL 2 BASIC16.94■□□□□ 0.3
CCDC42Q96M95 OSBPL5-210ENST00000525498 2733 ntTSL 2 BASIC16.94■□□□□ 0.3
CCDC42Q96M95 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC42Q96M95 ZNF557-201ENST00000252840 2268 ntAPPRIS P3 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC42Q96M95 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC42Q96M95 ZBED1P1-201ENST00000502364 1930 ntBASIC16.94■□□□□ 0.3
CCDC42Q96M95 FAM122A-201ENST00000394264 4575 ntAPPRIS P1 BASIC16.94■□□□□ 0.3
CCDC42Q96M95 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC16.94■□□□□ 0.3
CCDC42Q96M95 AFF4-201ENST00000265343 9552 ntAPPRIS P1 TSL 1 (best) BASIC16.94■□□□□ 0.3
CCDC42Q96M95 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC16.94■□□□□ 0.3
CCDC42Q96M95 TRMT10C-201ENST00000309922 1819 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC42Q96M95 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC42Q96M95 MEIOC-201ENST00000409122 4604 ntAPPRIS P2 TSL 5 BASIC16.93■□□□□ 0.3
CCDC42Q96M95 CCDC22-201ENST00000376227 2319 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC42Q96M95 ITPRIPL2-201ENST00000381440 7247 ntAPPRIS P1 BASIC16.93■□□□□ 0.3
CCDC42Q96M95 LINC00552-201ENST00000625151 2579 ntBASIC16.93■□□□□ 0.3
CCDC42Q96M95 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC42Q96M95 UBE3B-202ENST00000342494 5722 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC42Q96M95 NTRK2-202ENST00000304053 8226 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC42Q96M95 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC16.93■□□□□ 0.3
CCDC42Q96M95 GPR137C-201ENST00000321662 3888 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC42Q96M95 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
CCDC42Q96M95 TPGS2-201ENST00000334295 4030 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC42Q96M95 TMEM201-202ENST00000340381 3776 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
CCDC42Q96M95 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC16.93■□□□□ 0.3
CCDC42Q96M95 LRCH3-202ENST00000414675 2299 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
CCDC42Q96M95 UNC13B-201ENST00000378495 6303 ntAPPRIS P3 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC42Q96M95 AFF3-203ENST00000409579 4342 ntAPPRIS P3 TSL 5 BASIC16.93■□□□□ 0.3
CCDC42Q96M95 TMEM135-209ENST00000532959 1149 ntTSL 2 BASIC16.93■□□□□ 0.3
CCDC42Q96M95 AC025162.1-201ENST00000554022 565 ntTSL 4 BASIC16.93■□□□□ 0.3
CCDC42Q96M95 NAA38-207ENST00000576861 556 ntTSL 3 BASIC16.93■□□□□ 0.3
CCDC42Q96M95 STX10-207ENST00000589083 1241 ntTSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC42Q96M95 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC42Q96M95 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC42Q96M95 APBB1-218ENST00000608655 1920 ntTSL 5 BASIC16.93■□□□□ 0.3
CCDC42Q96M95 CUL7-203ENST00000535468 5504 ntAPPRIS ALT2 TSL 2 BASIC16.93■□□□□ 0.3
CCDC42Q96M95 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC16.93■□□□□ 0.3
CCDC42Q96M95 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC42Q96M95 TOM1L2-209ENST00000540946 1420 ntTSL 2 BASIC16.93■□□□□ 0.3
CCDC42Q96M95 TAF6-201ENST00000344095 2727 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC42Q96M95 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC16.93■□□□□ 0.3
CCDC42Q96M95 COL5A1-208ENST00000618395 8437 ntAPPRIS ALT2 TSL 5 BASIC16.93■□□□□ 0.3
CCDC42Q96M95 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC16.93■□□□□ 0.3
CCDC42Q96M95 COCH-202ENST00000396618 2536 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC42Q96M95 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC16.93■□□□□ 0.3
CCDC42Q96M95 ATF7-205ENST00000548446 1892 ntAPPRIS ALT1 TSL 2 BASIC16.93■□□□□ 0.3
CCDC42Q96M95 AC239800.3-201ENST00000424684 5243 ntTSL 5 BASIC16.93■□□□□ 0.3
CCDC42Q96M95 RTEL1-205ENST00000370018 4955 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC42Q96M95 ANOS1-201ENST00000262648 6314 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC42Q96M95 MAP2K7-201ENST00000397979 3361 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC42Q96M95 SOCS5-202ENST00000394861 4058 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC42Q96M95 AMPD3-203ENST00000396554 3806 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC42Q96M95 ZFY-201ENST00000155093 5239 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC42Q96M95 AJ011931.1-201ENST00000618749 2492 ntBASIC16.92■□□□□ 0.3
CCDC42Q96M95 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC42Q96M95 OPA1-204ENST00000361828 6381 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
CCDC42Q96M95 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC42Q96M95 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC42Q96M95 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC16.92■□□□□ 0.3
CCDC42Q96M95 PCK2-203ENST00000545054 2505 ntTSL 2 BASIC16.92■□□□□ 0.3
CCDC42Q96M95 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC16.92■□□□□ 0.3
CCDC42Q96M95 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC16.92■□□□□ 0.3
CCDC42Q96M95 FAM46C-201ENST00000369448 5751 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC42Q96M95 DPY30-201ENST00000295066 631 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC42Q96M95 TMEM89-201ENST00000330862 662 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC42Q96M95 HELT-201ENST00000338875 1008 ntTSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC42Q96M95 DPY30-202ENST00000342166 708 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC42Q96M95 NDUFA4L2-201ENST00000393825 1186 ntAPPRIS P1 TSL 1 (best) BASIC16.92■□□□□ 0.3
CCDC42Q96M95 FAM58CP-201ENST00000435741 640 ntBASIC16.92■□□□□ 0.3
CCDC42Q96M95 SPCS2P4-201ENST00000436160 681 ntBASIC16.92■□□□□ 0.3
CCDC42Q96M95 SPDYE11-202ENST00000450699 704 ntBASIC16.92■□□□□ 0.3
CCDC42Q96M95 KRT18P3-201ENST00000451602 1288 ntBASIC16.92■□□□□ 0.3
CCDC42Q96M95 IGHV3-62-201ENST00000520057 340 ntBASIC16.92■□□□□ 0.3
CCDC42Q96M95 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC16.92■□□□□ 0.3
CCDC42Q96M95 MAX-210ENST00000555419 765 ntTSL 5 BASIC16.92■□□□□ 0.3
CCDC42Q96M95 SPDYE9P-201ENST00000570642 692 ntBASIC16.92■□□□□ 0.3
CCDC42Q96M95 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC16.92■□□□□ 0.3
CCDC42Q96M95 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC16.92■□□□□ 0.3
Retrieved 100 of 98,524 protein–RNA pairs in 45.5 ms