Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 SERPINH1-201ENST00000358171 2225 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 SLC13A5-208ENST00000573648 1723 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 KCNQ2-215ENST00000629241 2853 ntTSL 5 BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 NSMCE3-201ENST00000332303 4838 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 FHL1-205ENST00000370690 2441 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 CNOT6-207ENST00000618123 6250 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 C8G-201ENST00000224181 855 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 RPS16-202ENST00000339471 643 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 PPIE-202ENST00000356511 1079 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 AL133267.1-201ENST00000398220 340 ntBASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 IL1R2-203ENST00000441002 1106 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 DNM1P51-201ENST00000558149 522 ntBASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 CMC2-214ENST00000565925 640 ntTSL 5 BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 OR10B1P-201ENST00000601666 907 ntBASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 AL450472.2-201ENST00000603663 1156 ntBASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 IFFO1-201ENST00000336604 2686 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 FAM210A-201ENST00000322247 4340 ntAPPRIS P1 TSL 2 BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 GRAMD2B-218ENST00000542322 2977 ntTSL 2 BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 CDK16-223ENST00000622098 2968 ntTSL 2 BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 RPAIN-203ENST00000381209 1535 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 CDK11A-203ENST00000357760 2446 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 CDK11A-204ENST00000358779 2419 ntAPPRIS ALT1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 CDK11A-206ENST00000378638 2429 ntTSL 5 BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 CDK11A-208ENST00000404249 2449 ntAPPRIS P4 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SMC1BQ8NDV3 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 AC004899.1-201ENST00000424687 1714 ntBASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 PIGZ-202ENST00000412723 2701 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 POC1A-201ENST00000296484 1898 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 REXO1L1P-202ENST00000608646 1974 ntBASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 CR392000.2-201ENST00000640235 1994 ntTSL 2 BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 NKX2-2-201ENST00000377142 2092 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 PLD3-206ENST00000409587 2180 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 SYT6-205ENST00000609117 4424 ntTSL 5 BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 MXD1-201ENST00000264444 5587 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 MYZAP-201ENST00000267853 2361 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 SARDH-205ENST00000422262 2367 ntTSL 5 BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 NFATC4-218ENST00000554966 2506 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 NFATC4-225ENST00000556169 2509 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 PIGL-201ENST00000225609 1137 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 FAM27C-201ENST00000377542 616 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 CCDC107-204ENST00000378409 1173 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 REEP5-205ENST00000504247 480 ntTSL 5 BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 REEP5-207ENST00000513339 1139 ntTSL 2 BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 TMBIM4-208ENST00000542724 770 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 C12orf10-207ENST00000549488 840 ntTSL 5 BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 PARD6G-AS1-205ENST00000589574 647 ntTSL 3 BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 PYY-202ENST00000592796 580 ntAPPRIS ALT1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 AL356417.2-202ENST00000608986 532 ntTSL 3 BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 MYOZ3-209ENST00000615557 1031 ntTSL 2 BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 HSF2-202ENST00000452194 2643 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 ASB13-201ENST00000357700 2699 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 MPP1-204ENST00000393531 1389 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 ACOT7-203ENST00000377845 1432 ntAPPRIS ALT2 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 FAM153A-220ENST00000513554 1437 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 KLK6-201ENST00000310157 1511 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 SPERT-204ENST00000610924 1505 ntAPPRIS ALT2 TSL 5 BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 AC007787.1-201ENST00000588095 1583 ntBASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 BRD2-201ENST00000374825 4894 ntAPPRIS P3 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 CCDC183-201ENST00000338005 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 GOLGA2P3Y-201ENST00000416946 1653 ntBASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 CYP11A1-202ENST00000358632 2001 ntTSL 2 BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 AC141586.5-201ENST00000624546 2050 ntBASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 C18orf8-201ENST00000269221 2162 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 ZMIZ1-201ENST00000334512 7546 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
SMC1BQ8NDV3 PCDHGC5-202ENST00000610789 2763 ntAPPRIS ALT2 BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 DDHD1-202ENST00000357758 5603 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 PRSS36-201ENST00000268281 2840 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 SETD3-202ENST00000331768 2878 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 LRCH2-201ENST00000317135 4929 ntAPPRIS P3 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 ATP6V1F-201ENST00000249289 704 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 ACSS2-201ENST00000253382 2925 ntTSL 2 BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 PLA1A-201ENST00000273371 1786 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 AC005833.1-201ENST00000280684 4237 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 FAM227B-201ENST00000299338 2008 ntAPPRIS P3 TSL 2 BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 RAB33B-201ENST00000305626 4562 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 TRIM72-201ENST00000322122 8500 ntAPPRIS P1 TSL 2 BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 WDR45-202ENST00000356463 1688 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 ERGIC3-203ENST00000357394 1357 ntAPPRIS P4 TSL 2 BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 ACTA1-202ENST00000366684 1491 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 TFAP2E-201ENST00000373235 2189 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 CTNNBIP1-201ENST00000377256 451 ntAPPRIS P1 TSL 5 BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 SQSTM1-202ENST00000389805 2986 ntAPPRIS P1 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 ALAS2-203ENST00000396198 1936 ntTSL 5 BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 PUS10-202ENST00000398658 1227 ntTSL 1 (best) BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 TSC2-204ENST00000401874 5421 ntAPPRIS ALT2 TSL 1 (best) BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 CHTOP-205ENST00000403433 1923 ntAPPRIS ALT2 TSL 5 BASIC18.36■□□□□ 0.53
SMC1BQ8NDV3 AL357558.1-201ENST00000416646 456 ntTSL 2 BASIC18.36■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 29 ms