Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 AC245056.1-201ENST00000437631 384 ntTSL 5 BASIC20.87■□□□□ 0.93
NPHP3Q7Z494 KLK11-204ENST00000453757 1174 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP3Q7Z494 RTN3P1-201ENST00000536295 711 ntBASIC20.87■□□□□ 0.93
NPHP3Q7Z494 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC20.87■□□□□ 0.93
NPHP3Q7Z494 CYB5D1-202ENST00000570446 570 ntTSL 4 BASIC20.87■□□□□ 0.93
NPHP3Q7Z494 WDR7-208ENST00000589935 544 ntTSL 4 BASIC20.87■□□□□ 0.93
NPHP3Q7Z494 CLUHP2-201ENST00000426660 1303 ntBASIC20.87■□□□□ 0.93
NPHP3Q7Z494 CFAP36-201ENST00000339012 1373 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP3Q7Z494 AC004890.2-201ENST00000426347 2419 ntTSL 5 BASIC20.87■□□□□ 0.93
NPHP3Q7Z494 ZSWIM8-AS1-201ENST00000456638 1460 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP3Q7Z494 GPBAR1-203ENST00000521462 1465 ntAPPRIS P1 TSL 2 BASIC20.87■□□□□ 0.93
NPHP3Q7Z494 GGT7-201ENST00000336431 2642 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP3Q7Z494 SLCO6A1-207ENST00000513675 1611 ntTSL 2 BASIC20.87■□□□□ 0.93
NPHP3Q7Z494 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP3Q7Z494 PROSER2-201ENST00000277570 3333 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP3Q7Z494 L1CAM-203ENST00000370055 4655 ntTSL 5 BASIC20.87■□□□□ 0.93
NPHP3Q7Z494 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
NPHP3Q7Z494 N4BP2L1-210ENST00000613078 2032 ntTSL 5 BASIC20.87■□□□□ 0.93
NPHP3Q7Z494 MTA2-204ENST00000527204 2265 ntTSL 2 BASIC20.87■□□□□ 0.93
NPHP3Q7Z494 GALNT11-205ENST00000430044 2727 ntAPPRIS P1 TSL 5 BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 MAP3K8-207ENST00000542547 2782 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 TMEM219-202ENST00000414689 1024 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 CDK2AP2-205ENST00000531506 634 ntTSL 2 BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 TMEM258-204ENST00000537328 575 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 AQP8-202ENST00000566125 1276 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 TMEM219-204ENST00000566848 1292 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 MIR4783-201ENST00000580343 82 ntBASIC20.86■□□□□ 0.93
NPHP3Q7Z494 Metazoa_SRP.65-201ENST00000615602 264 ntBASIC20.86■□□□□ 0.93
NPHP3Q7Z494 CDK7-214ENST00000626796 358 ntTSL 5 BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 CDK7-215ENST00000629350 1149 ntTSL 5 BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 DNAJC19-201ENST00000382564 1453 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 WDR83-201ENST00000418543 1457 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 IL12A-201ENST00000305579 1522 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 MSI2-204ENST00000442934 1624 ntTSL 2 BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 KNSTRN-201ENST00000249776 1714 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 CMKLR1-204ENST00000550402 1893 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 PRORSD1P-202ENST00000563365 2154 ntBASIC20.86■□□□□ 0.93
NPHP3Q7Z494 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 CPNE6-201ENST00000397016 2235 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 CPNE6-203ENST00000537691 2233 ntTSL 2 BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 EVI5L-202ENST00000538904 2418 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 RWDD4-202ENST00000327570 2590 ntAPPRIS ALT1 TSL 3 BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 CCDC142-201ENST00000290418 2835 ntAPPRIS P2 TSL 2 BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 KCNA2-201ENST00000316361 2827 ntAPPRIS P1 TSL 2 BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 C18orf63-201ENST00000579455 5127 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 FZR1-203ENST00000441788 5212 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
NPHP3Q7Z494 RNF222-201ENST00000344001 2786 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 ZC3H12A-201ENST00000373087 2684 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 ZNF302-202ENST00000446502 2635 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 SEPHS2-201ENST00000478753 2551 ntAPPRIS P1 BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 RPA3-201ENST00000223129 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 BATF2-202ENST00000435842 1949 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 PTHLH-201ENST00000201015 1872 ntAPPRIS P3 TSL 3 BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 AC021148.1-201ENST00000513652 1532 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 ARV1-201ENST00000310256 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 IL9-201ENST00000274520 591 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 PIK3IP1-202ENST00000402249 999 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 BUD31-202ENST00000403633 1139 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 MESTP3-201ENST00000503460 968 ntBASIC20.85■□□□□ 0.93
NPHP3Q7Z494 FAM153B-214ENST00000512862 1071 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 AL049795.2-201ENST00000515055 667 ntTSL 2 BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 IGLV3-15-201ENST00000518356 244 ntBASIC20.85■□□□□ 0.93
NPHP3Q7Z494 SMIM23-202ENST00000523047 573 ntAPPRIS P5 TSL 2 BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 CFL1-206ENST00000527344 962 ntTSL 2 BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 LINC01629-201ENST00000553613 581 ntTSL 4 BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 AC108134.4-201ENST00000570700 302 ntTSL 3 BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 MIR4754-201ENST00000582477 89 ntBASIC20.85■□□□□ 0.93
NPHP3Q7Z494 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 NR2F2-AS1-215ENST00000620029 1223 ntTSL 5 BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 STX17-205ENST00000525640 2523 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 MPP1-205ENST00000413259 2195 ntTSL 2 BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 RCL1-204ENST00000381750 2134 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 ADGRG3-202ENST00000450388 1785 ntAPPRIS ALT2 TSL 2 BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 HSD17B6-205ENST00000554643 1751 ntAPPRIS P1 TSL 5 BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 RAPGEFL1-212ENST00000620260 3855 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 CERCAM-201ENST00000372838 2685 ntAPPRIS P3 TSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 MVK-214ENST00000629016 1591 ntTSL 5 BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 EIF2AK3-201ENST00000303236 4646 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
NPHP3Q7Z494 ZNF12-204ENST00000405858 5051 ntAPPRIS P4 TSL 1 (best) BASIC20.84■□□□□ 0.93
NPHP3Q7Z494 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NPHP3Q7Z494 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
NPHP3Q7Z494 SSC5D-202ENST00000587166 3017 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 45.6 ms