Protein–RNA interactions for Protein: Q70EL1

USP54, Inactive ubiquitin carboxyl-terminal hydrolase 54, humanhuman

Predictions only

Length 1,684 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP54Q70EL1 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
USP54Q70EL1 AC091046.1-201ENST00000331871 207 ntBASIC20.27■□□□□ 0.84
USP54Q70EL1 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC20.27■□□□□ 0.84
USP54Q70EL1 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC20.27■□□□□ 0.84
USP54Q70EL1 MSRA-203ENST00000441698 788 ntTSL 2 BASIC20.27■□□□□ 0.84
USP54Q70EL1 RCC2P8-201ENST00000502779 1035 ntBASIC20.27■□□□□ 0.84
USP54Q70EL1 AC008406.1-201ENST00000509530 541 ntTSL 3 BASIC20.27■□□□□ 0.84
USP54Q70EL1 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC20.27■□□□□ 0.84
USP54Q70EL1 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC20.27■□□□□ 0.84
USP54Q70EL1 FOS-206ENST00000555347 1280 ntTSL 2 BASIC20.27■□□□□ 0.84
USP54Q70EL1 AL135838.1-202ENST00000556411 441 ntTSL 2 BASIC20.27■□□□□ 0.84
USP54Q70EL1 CCNB2-203ENST00000559622 1064 ntTSL 5 BASIC20.27■□□□□ 0.84
USP54Q70EL1 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC20.27■□□□□ 0.84
USP54Q70EL1 AL132994.2-201ENST00000603120 687 ntBASIC20.27■□□□□ 0.84
USP54Q70EL1 HDDC2-204ENST00000608295 879 ntTSL 5 BASIC20.27■□□□□ 0.84
USP54Q70EL1 AC079336.7-201ENST00000623428 1078 ntBASIC20.27■□□□□ 0.84
USP54Q70EL1 LDLRAP1-201ENST00000374338 2940 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP54Q70EL1 RXRB-201ENST00000374680 2908 ntAPPRIS P3 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP54Q70EL1 PHKG1-205ENST00000452681 2226 ntTSL 2 BASIC20.27■□□□□ 0.84
USP54Q70EL1 ZNF503-201ENST00000372524 3347 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
USP54Q70EL1 LIPE-AS1-205ENST00000594688 2383 ntTSL 2 BASIC20.27■□□□□ 0.84
USP54Q70EL1 SALL4-203ENST00000395997 1918 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
USP54Q70EL1 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
USP54Q70EL1 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
USP54Q70EL1 NFATC2-205ENST00000609507 2662 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
USP54Q70EL1 PDXK-202ENST00000327574 2583 ntTSL 2 BASIC20.27■□□□□ 0.83
USP54Q70EL1 NR4A3-202ENST00000338488 2588 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
USP54Q70EL1 ZNF672-201ENST00000306562 2989 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
USP54Q70EL1 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
USP54Q70EL1 SERTAD1-201ENST00000357949 2114 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP54Q70EL1 SLC25A35-202ENST00000577745 1860 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP54Q70EL1 ATP6AP2-213ENST00000636251 1877 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
USP54Q70EL1 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
USP54Q70EL1 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC20.26■□□□□ 0.83
USP54Q70EL1 IGHV3-13-201ENST00000390602 430 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
USP54Q70EL1 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
USP54Q70EL1 OSM-202ENST00000403389 1000 ntAPPRIS ALT2 TSL 3 BASIC20.26■□□□□ 0.83
USP54Q70EL1 GLIS3-AS1-201ENST00000451340 734 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
USP54Q70EL1 RPS2P36-201ENST00000456516 831 ntBASIC20.26■□□□□ 0.83
USP54Q70EL1 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC20.26■□□□□ 0.83
USP54Q70EL1 CFL1-214ENST00000534769 758 ntTSL 2 BASIC20.26■□□□□ 0.83
USP54Q70EL1 CD63-214ENST00000552692 949 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP54Q70EL1 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
USP54Q70EL1 YRDCP1-201ENST00000621419 643 ntBASIC20.26■□□□□ 0.83
USP54Q70EL1 VRK3-207ENST00000594092 1831 ntAPPRIS ALT2 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP54Q70EL1 TANGO2-205ENST00000401886 1559 ntTSL 5 BASIC20.26■□□□□ 0.83
USP54Q70EL1 WDR20-211ENST00000556807 2382 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
USP54Q70EL1 CXorf40B-202ENST00000370404 1316 ntAPPRIS P2 TSL 2 BASIC20.26■□□□□ 0.83
USP54Q70EL1 KLK11-207ENST00000594768 1347 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP54Q70EL1 SEC13-208ENST00000397109 1467 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
USP54Q70EL1 KIF22-208ENST00000569382 2020 ntTSL 5 BASIC20.26■□□□□ 0.83
USP54Q70EL1 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP54Q70EL1 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
USP54Q70EL1 FKBP6-201ENST00000252037 1500 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP54Q70EL1 CRISPLD2-203ENST00000564567 1651 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
USP54Q70EL1 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP54Q70EL1 RANBP1-201ENST00000331821 837 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
USP54Q70EL1 AL645608.5-201ENST00000398216 443 ntTSL 3 BASIC20.26■□□□□ 0.83
USP54Q70EL1 LBH-202ENST00000401506 485 ntTSL 3 BASIC20.26■□□□□ 0.83
USP54Q70EL1 AL391361.3-201ENST00000420601 379 ntTSL 2 BASIC20.26■□□□□ 0.83
USP54Q70EL1 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC20.26■□□□□ 0.83
USP54Q70EL1 AC138123.2-203ENST00000552451 653 ntTSL 3 BASIC20.26■□□□□ 0.83
USP54Q70EL1 EID1-202ENST00000560490 584 ntTSL 3 BASIC20.26■□□□□ 0.83
USP54Q70EL1 TBC1D16-203ENST00000570373 961 ntTSL 5 BASIC20.26■□□□□ 0.83
USP54Q70EL1 AL590440.2-201ENST00000641973 1595 ntBASIC20.25■□□□□ 0.83
USP54Q70EL1 GCNT7-201ENST00000243913 2064 ntTSL 2 BASIC20.25■□□□□ 0.83
USP54Q70EL1 ZNF398-205ENST00000491174 2232 ntTSL 2 BASIC20.25■□□□□ 0.83
USP54Q70EL1 PRKCD-201ENST00000330452 2680 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP54Q70EL1 ARSI-201ENST00000328668 3161 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP54Q70EL1 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
USP54Q70EL1 AP4M1-205ENST00000422582 1814 ntTSL 2 BASIC20.25■□□□□ 0.83
USP54Q70EL1 AC006058.4-201ENST00000624016 1670 ntBASIC20.25■□□□□ 0.83
USP54Q70EL1 SYT7-201ENST00000263846 4854 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP54Q70EL1 DPP9-210ENST00000597849 2025 ntTSL 5 BASIC20.25■□□□□ 0.83
USP54Q70EL1 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP54Q70EL1 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC20.25■□□□□ 0.83
USP54Q70EL1 C6orf52-201ENST00000259983 619 ntAPPRIS P2 TSL 5 BASIC20.25■□□□□ 0.83
USP54Q70EL1 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP54Q70EL1 HLA-DQB2-229ENST00000411527 1059 ntBASIC20.25■□□□□ 0.83
USP54Q70EL1 LY6G6C-202ENST00000495859 937 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
USP54Q70EL1 GUSBP1-202ENST00000508260 1012 ntTSL 2 BASIC20.25■□□□□ 0.83
USP54Q70EL1 CMTM3-215ENST00000568477 687 ntTSL 3 BASIC20.25■□□□□ 0.83
USP54Q70EL1 AC024941.2-201ENST00000625763 493 ntTSL 2 BASIC20.25■□□□□ 0.83
USP54Q70EL1 RPL35-206ENST00000629845 340 ntTSL 5 BASIC20.25■□□□□ 0.83
USP54Q70EL1 CYP4B1-215ENST00000640628 969 ntTSL 5 BASIC20.25■□□□□ 0.83
USP54Q70EL1 AL805961.1-203ENST00000641078 1258 ntBASIC20.25■□□□□ 0.83
USP54Q70EL1 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP54Q70EL1 MZT1-201ENST00000377818 2299 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP54Q70EL1 INHBA-203ENST00000442711 1632 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
USP54Q70EL1 ZNF821-203ENST00000446827 1822 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
USP54Q70EL1 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP54Q70EL1 REM1-201ENST00000201979 1665 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP54Q70EL1 CREB3L2-204ENST00000456390 2360 ntTSL 2 BASIC20.24■□□□□ 0.83
USP54Q70EL1 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP54Q70EL1 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP54Q70EL1 CENPK-202ENST00000396679 1734 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP54Q70EL1 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
USP54Q70EL1 PES1-204ENST00000402284 2144 ntTSL 5 BASIC20.24■□□□□ 0.83
USP54Q70EL1 MBTD1-201ENST00000376381 1420 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
USP54Q70EL1 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 28.3 ms