Protein–RNA interactions for Protein: Q6ZMZ3

SYNE3, Nesprin-3, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE3Q6ZMZ3 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 CLN3-229ENST00000567963 1452 ntTSL 5 BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 AHCY-201ENST00000217426 2143 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 BCL9L-202ENST00000526143 5514 ntTSL 5 BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 HMBOX1-212ENST00000558662 1765 ntTSL 5 BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 RALGAPA1-203ENST00000389698 7864 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 OSTC-201ENST00000361564 1077 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 C6orf99-202ENST00000367073 769 ntTSL 5 BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 C1orf43-203ENST00000368516 872 ntTSL 2 BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 OR5C1-201ENST00000373680 963 ntAPPRIS P1 BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 EEF1B2-202ENST00000392221 880 ntAPPRIS P1 TSL 2 BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 HNRNPA1P40-201ENST00000426371 1278 ntBASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 AL022068.1-202ENST00000432171 794 ntTSL 3 BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 TMEM176B-205ENST00000450753 1006 ntTSL 2 BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 AC092910.3-201ENST00000484076 969 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 TIMM17BP1-201ENST00000545713 516 ntBASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 HNRNPDL-208ENST00000621267 4139 ntAPPRIS P2 TSL 1 (best) BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 ITGAV-201ENST00000261023 7030 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 GCFC2-201ENST00000321027 4440 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 MKNK2-201ENST00000250896 3774 ntAPPRIS P4 TSL 5 BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 CES1-202ENST00000361503 1835 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 AC127383.1-201ENST00000444697 1800 ntBASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 NEK11-210ENST00000510769 2149 ntTSL 2 BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 GCK-203ENST00000395796 2539 ntTSL 1 (best) BASIC18.46■□□□□ 0.55
SYNE3Q6ZMZ3 MYH11-211ENST00000576790 6272 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
SYNE3Q6ZMZ3 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC18.46■□□□□ 0.54
SYNE3Q6ZMZ3 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC18.46■□□□□ 0.54
SYNE3Q6ZMZ3 AC020658.6-201ENST00000623564 1870 ntBASIC18.46■□□□□ 0.54
SYNE3Q6ZMZ3 BTBD7P1-201ENST00000447253 1453 ntBASIC18.46■□□□□ 0.54
SYNE3Q6ZMZ3 RASA1-201ENST00000274376 3752 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 TMEM263-201ENST00000280756 3362 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 C7orf43-207ENST00000457641 2005 ntTSL 5 BASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 MFSD5-202ENST00000534842 2038 ntTSL 2 BASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 KIAA1755-206ENST00000496900 2557 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 AC007182.1-201ENST00000455232 2159 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 CCDC182-201ENST00000299415 832 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 ANKRD54-202ENST00000406423 954 ntTSL 3 BASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 MARK3-204ENST00000416682 2969 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 RAD18-204ENST00000418463 563 ntTSL 4 BASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 RAD18-205ENST00000421052 582 ntTSL 3 BASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 AC004890.2-204ENST00000481968 304 ntBASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 SLED1-202ENST00000512051 380 ntBASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 CMC2-214ENST00000565925 640 ntTSL 5 BASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 AC022144.1-201ENST00000602255 1580 ntBASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 MED26-201ENST00000263390 3174 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 ZNF662-201ENST00000328199 3186 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 PTPRU-201ENST00000345512 4470 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 AMT-233ENST00000636522 1620 ntTSL 2 BASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 AC105250.1-201ENST00000509378 2057 ntBASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 AC100803.3-201ENST00000606664 2961 ntTSL 5 BASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 PDE1B-201ENST00000243052 3444 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 NPAS2-201ENST00000335681 4007 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
SYNE3Q6ZMZ3 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SYNE3Q6ZMZ3 KLHDC8A-201ENST00000367155 2928 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
SYNE3Q6ZMZ3 AP000704.1-201ENST00000637940 2182 ntTSL 5 BASIC18.44■□□□□ 0.54
SYNE3Q6ZMZ3 AC087481.3-201ENST00000602886 1894 ntBASIC18.44■□□□□ 0.54
SYNE3Q6ZMZ3 KCNJ14-201ENST00000342291 2960 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SYNE3Q6ZMZ3 KIAA0391-202ENST00000321130 1589 ntTSL 3 BASIC18.44■□□□□ 0.54
SYNE3Q6ZMZ3 CEP170B-204ENST00000556508 6683 ntTSL 5 BASIC18.44■□□□□ 0.54
SYNE3Q6ZMZ3 CCAR2-202ENST00000389279 3980 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
SYNE3Q6ZMZ3 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
SYNE3Q6ZMZ3 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SYNE3Q6ZMZ3 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC18.44■□□□□ 0.54
SYNE3Q6ZMZ3 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SYNE3Q6ZMZ3 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
SYNE3Q6ZMZ3 MIR770-201ENST00000390219 98 ntBASIC18.44■□□□□ 0.54
SYNE3Q6ZMZ3 ESPNP-202ENST00000414828 571 ntTSL 3 BASIC18.44■□□□□ 0.54
SYNE3Q6ZMZ3 PCAT6-201ENST00000417262 748 ntTSL 2 BASIC18.44■□□□□ 0.54
SYNE3Q6ZMZ3 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC18.44■□□□□ 0.54
SYNE3Q6ZMZ3 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
SYNE3Q6ZMZ3 AC009477.1-201ENST00000452936 217 ntBASIC18.44■□□□□ 0.54
SYNE3Q6ZMZ3 INGX-202ENST00000489074 768 ntBASIC18.44■□□□□ 0.54
SYNE3Q6ZMZ3 C4orf3-202ENST00000504110 667 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
SYNE3Q6ZMZ3 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
SYNE3Q6ZMZ3 AQP6-203ENST00000551733 849 ntTSL 3 BASIC18.44■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 32.9 ms