Protein–RNA interactions for Protein: P78317

RNF4, E3 ubiquitin-protein ligase RNF4, humanhuman

Predictions only

Length 190 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF4P78317 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC14.49□□□□□ -0.09
RNF4P78317 LINC01534-201ENST00000425254 815 ntTSL 2 BASIC14.49□□□□□ -0.09
RNF4P78317 VCX3B-204ENST00000453306 868 ntAPPRIS ALT2 TSL 5 BASIC14.49□□□□□ -0.09
RNF4P78317 RN7SL692P-201ENST00000464677 288 ntBASIC14.49□□□□□ -0.09
RNF4P78317 ELK1P1-201ENST00000485699 580 ntBASIC14.49□□□□□ -0.09
RNF4P78317 EVX1-AS-202ENST00000519050 576 ntTSL 4 BASIC14.49□□□□□ -0.09
RNF4P78317 IFITM2-204ENST00000533141 588 ntAPPRIS ALT2 TSL 4 BASIC14.49□□□□□ -0.09
RNF4P78317 AC009088.3-201ENST00000563605 357 ntTSL 3 BASIC14.49□□□□□ -0.09
RNF4P78317 WASH4P-201ENST00000564273 1246 ntBASIC14.49□□□□□ -0.09
RNF4P78317 AC004233.1-201ENST00000570515 608 ntTSL 4 BASIC14.49□□□□□ -0.09
RNF4P78317 NOP53-AS1-201ENST00000602048 540 ntTSL 4 BASIC14.49□□□□□ -0.09
RNF4P78317 TMEM261P1-201ENST00000604899 340 ntBASIC14.49□□□□□ -0.09
RNF4P78317 RDM1-220ENST00000616596 1032 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
RNF4P78317 RDM1-228ENST00000620284 1177 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
RNF4P78317 ZNF655-225ENST00000626122 705 ntTSL 5 BASIC14.49□□□□□ -0.09
RNF4P78317 TCF25-202ENST00000263347 2377 ntTSL 5 BASIC14.49□□□□□ -0.09
RNF4P78317 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC14.49□□□□□ -0.09
RNF4P78317 TEKT2-201ENST00000207457 1509 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RNF4P78317 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.49□□□□□ -0.09
RNF4P78317 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC14.49□□□□□ -0.09
RNF4P78317 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
RNF4P78317 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC14.49□□□□□ -0.09
RNF4P78317 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RNF4P78317 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC14.49□□□□□ -0.09
RNF4P78317 TP73-209ENST00000603362 1668 ntTSL 5 BASIC14.49□□□□□ -0.09
RNF4P78317 DKFZP434H168-201ENST00000567381 1905 ntBASIC14.49□□□□□ -0.09
RNF4P78317 SLC35C2-202ENST00000317734 2175 ntTSL 2 BASIC14.49□□□□□ -0.09
RNF4P78317 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RNF4P78317 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC14.49□□□□□ -0.09
RNF4P78317 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC14.49□□□□□ -0.09
RNF4P78317 BMI1-201ENST00000376663 3428 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RNF4P78317 CTPS2-201ENST00000359276 3629 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RNF4P78317 CLEC18A-203ENST00000449317 1875 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
RNF4P78317 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
RNF4P78317 DDX5-201ENST00000225792 2554 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RNF4P78317 KLF11-201ENST00000305883 4030 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
RNF4P78317 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RNF4P78317 VSIG10L-201ENST00000335624 3397 ntAPPRIS P1 TSL 5 BASIC14.48□□□□□ -0.09
RNF4P78317 MAP4K1-208ENST00000589130 2654 ntTSL 5 BASIC14.48□□□□□ -0.09
RNF4P78317 VCX-201ENST00000341408 677 ntAPPRIS ALT2 TSL 5 BASIC14.48□□□□□ -0.09
RNF4P78317 COPE-202ENST00000349893 948 ntTSL 2 BASIC14.48□□□□□ -0.09
RNF4P78317 NGF-201ENST00000369512 1047 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RNF4P78317 BMP7-201ENST00000395863 4013 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RNF4P78317 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC14.48□□□□□ -0.09
RNF4P78317 UBR5-212ENST00000521922 9008 ntAPPRIS ALT1 TSL 5 BASIC14.48□□□□□ -0.09
RNF4P78317 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC14.48□□□□□ -0.09
RNF4P78317 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC14.48□□□□□ -0.09
RNF4P78317 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC14.48□□□□□ -0.09
RNF4P78317 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC14.48□□□□□ -0.09
RNF4P78317 PSMD2-201ENST00000310118 3449 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RNF4P78317 SLC2A9-202ENST00000309065 1866 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
RNF4P78317 STEAP3-202ENST00000393107 1871 ntAPPRIS P1 TSL 1 (best) BASIC14.48□□□□□ -0.09
RNF4P78317 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC14.48□□□□□ -0.09
RNF4P78317 PIP4K2A-206ENST00000545335 1436 ntTSL 2 BASIC14.48□□□□□ -0.09
RNF4P78317 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC14.48□□□□□ -0.09
RNF4P78317 GRAMD2B-217ENST00000515200 3109 ntTSL 5 BASIC14.48□□□□□ -0.09
RNF4P78317 AC008741.2-201ENST00000612792 3115 ntBASIC14.48□□□□□ -0.09
RNF4P78317 ZSCAN2-214ENST00000546148 2242 ntAPPRIS P2 TSL 2 BASIC14.47□□□□□ -0.09
RNF4P78317 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC14.47□□□□□ -0.09
RNF4P78317 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14.47□□□□□ -0.09
RNF4P78317 HARS2-206ENST00000508522 1562 ntTSL 2 BASIC14.47□□□□□ -0.09
RNF4P78317 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC14.47□□□□□ -0.09
RNF4P78317 TBP-207ENST00000616883 1750 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
RNF4P78317 AKAP12-201ENST00000253332 6597 ntAPPRIS P4 TSL 1 (best) BASIC14.47□□□□□ -0.09
RNF4P78317 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC14.47□□□□□ -0.09
RNF4P78317 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RNF4P78317 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
RNF4P78317 MOG-215ENST00000376888 1529 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
RNF4P78317 CNN1-202ENST00000535659 1527 ntTSL 2 BASIC14.47□□□□□ -0.09
RNF4P78317 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
RNF4P78317 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC14.47□□□□□ -0.09
RNF4P78317 IDH2-201ENST00000330062 2694 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RNF4P78317 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RNF4P78317 UNC13A-204ENST00000550896 5200 ntAPPRIS ALT2 TSL 5 BASIC14.47□□□□□ -0.09
RNF4P78317 MRPL58-201ENST00000301585 890 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RNF4P78317 FIBP-201ENST00000338369 1261 ntTSL 1 (best) BASIC14.47□□□□□ -0.09
RNF4P78317 S100A16-202ENST00000368704 1146 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
RNF4P78317 DBNDD2-208ENST00000372723 1118 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
RNF4P78317 METTL26-204ENST00000397665 558 ntTSL 2 BASIC14.47□□□□□ -0.09
RNF4P78317 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC14.47□□□□□ -0.09
RNF4P78317 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC14.47□□□□□ -0.09
RNF4P78317 AJ271736.1-201ENST00000483543 773 ntTSL 5 BASIC14.47□□□□□ -0.09
RNF4P78317 GNG4-205ENST00000484517 684 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
RNF4P78317 AP003068.1-201ENST00000528887 544 ntTSL 4 BASIC14.47□□□□□ -0.09
RNF4P78317 AC092552.1-201ENST00000547243 906 ntBASIC14.47□□□□□ -0.09
RNF4P78317 AL596325.1-201ENST00000563991 1082 ntBASIC14.47□□□□□ -0.09
RNF4P78317 IFT20-209ENST00000579419 787 ntAPPRIS ALT1 TSL 3 BASIC14.47□□□□□ -0.09
RNF4P78317 CTBP2P3-201ENST00000585629 1255 ntBASIC14.47□□□□□ -0.09
RNF4P78317 CECR7-204ENST00000609932 568 ntTSL 2 BASIC14.47□□□□□ -0.09
RNF4P78317 IFI27-210ENST00000616764 716 ntAPPRIS P2 TSL 2 BASIC14.47□□□□□ -0.09
RNF4P78317 NDUFS7-218ENST00000618074 688 ntTSL 5 BASIC14.47□□□□□ -0.09
RNF4P78317 IFI27-213ENST00000620066 719 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
RNF4P78317 NDUFS7-219ENST00000620479 754 ntTSL 5 BASIC14.47□□□□□ -0.09
RNF4P78317 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC14.47□□□□□ -0.09
RNF4P78317 GAS2L3-201ENST00000266754 2218 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.09
RNF4P78317 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
RNF4P78317 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC14.47□□□□□ -0.09
RNF4P78317 KIF26A-201ENST00000315264 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC14.47□□□□□ -0.09
RNF4P78317 IRGQ-201ENST00000422989 9685 ntAPPRIS P1 TSL 5 BASIC14.47□□□□□ -0.09
RNF4P78317 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC14.47□□□□□ -0.09
Retrieved 100 of 98,524 protein–RNA pairs in 34.6 ms