Protein–RNA interactions for Protein: P55344

LIM2, Lens fiber membrane intrinsic protein, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIM2P55344 GJB6-202ENST00000356192 2131 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
LIM2P55344 DEK-201ENST00000244776 1441 ntTSL 2 BASIC14.86□□□□□ -0.03
LIM2P55344 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LIM2P55344 AC136759.1-203ENST00000527477 2196 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LIM2P55344 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
LIM2P55344 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LIM2P55344 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LIM2P55344 FLYWCH2-201ENST00000293981 915 ntAPPRIS P2 TSL 3 BASIC14.86□□□□□ -0.03
LIM2P55344 CD8B-201ENST00000331469 832 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LIM2P55344 RAC2-204ENST00000406508 893 ntTSL 5 BASIC14.86□□□□□ -0.03
LIM2P55344 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC14.86□□□□□ -0.03
LIM2P55344 BAX-206ENST00000415969 540 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LIM2P55344 SHBG-204ENST00000441599 973 ntAPPRIS ALT2 TSL 1 (best) BASIC14.86□□□□□ -0.03
LIM2P55344 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LIM2P55344 TMEM161B-AS1-202ENST00000501715 1101 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LIM2P55344 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC14.86□□□□□ -0.03
LIM2P55344 AP006333.1-201ENST00000543817 575 ntTSL 4 BASIC14.86□□□□□ -0.03
LIM2P55344 SRD5A3P1-201ENST00000603021 949 ntBASIC14.86□□□□□ -0.03
LIM2P55344 HIST1H3D-202ENST00000635200 948 ntAPPRIS P1 TSL 3 BASIC14.86□□□□□ -0.03
LIM2P55344 TFB2M-201ENST00000366514 1848 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LIM2P55344 LRP8-202ENST00000347547 2382 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LIM2P55344 HACE1-201ENST00000262903 4576 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LIM2P55344 EXO5-203ENST00000372703 2567 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
LIM2P55344 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
LIM2P55344 ZC2HC1C-201ENST00000238686 2249 ntTSL 5 BASIC14.86□□□□□ -0.03
LIM2P55344 BID-213ENST00000615414 2236 ntTSL 5 BASIC14.86□□□□□ -0.03
LIM2P55344 URAHP-202ENST00000409873 1349 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LIM2P55344 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC14.86□□□□□ -0.03
LIM2P55344 TUBA3E-201ENST00000312988 1542 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LIM2P55344 LMF2-201ENST00000216080 2658 ntTSL 2 BASIC14.86□□□□□ -0.03
LIM2P55344 TMEM50A-201ENST00000374358 2683 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LIM2P55344 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC14.86□□□□□ -0.03
LIM2P55344 NOP14-201ENST00000314262 2889 ntAPPRIS P3 TSL 1 (best) BASIC14.86□□□□□ -0.03
LIM2P55344 ITGA9-201ENST00000264741 7889 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LIM2P55344 RIMS1-213ENST00000517960 4428 ntTSL 5 BASIC14.86□□□□□ -0.03
LIM2P55344 RIMS1-215ENST00000520567 4442 ntTSL 5 BASIC14.86□□□□□ -0.03
LIM2P55344 CALR-201ENST00000316448 1903 ntAPPRIS P1 TSL 1 (best) BASIC14.86□□□□□ -0.03
LIM2P55344 DHX36-201ENST00000308361 3487 ntTSL 1 (best) BASIC14.86□□□□□ -0.03
LIM2P55344 TCP10-202ENST00000397829 2141 ntAPPRIS P2 TSL 1 (best) BASIC14.86□□□□□ -0.03
LIM2P55344 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LIM2P55344 AC008770.3-201ENST00000590798 1562 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
LIM2P55344 HNRNPF-201ENST00000337970 2186 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIM2P55344 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC14.85□□□□□ -0.03
LIM2P55344 RIMS1-210ENST00000491071 5047 ntTSL 5 BASIC14.85□□□□□ -0.03
LIM2P55344 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC14.85□□□□□ -0.03
LIM2P55344 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LIM2P55344 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIM2P55344 CLN3-201ENST00000333496 1608 ntTSL 5 BASIC14.85□□□□□ -0.03
LIM2P55344 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIM2P55344 LINC01565-201ENST00000356020 2697 ntTSL 2 BASIC14.85□□□□□ -0.03
LIM2P55344 COX11-201ENST00000299335 2497 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIM2P55344 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LIM2P55344 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC14.85□□□□□ -0.03
LIM2P55344 NDRG2-206ENST00000397844 2096 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LIM2P55344 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIM2P55344 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIM2P55344 LYPLA1-214ENST00000618741 2526 ntTSL 5 BASIC14.85□□□□□ -0.03
LIM2P55344 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIM2P55344 AC093423.3-201ENST00000370453 654 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
LIM2P55344 LINC00659-201ENST00000412500 540 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LIM2P55344 TOMM22P5-201ENST00000416399 439 ntBASIC14.85□□□□□ -0.03
LIM2P55344 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC14.85□□□□□ -0.03
LIM2P55344 TMPRSS11CP-201ENST00000453277 683 ntBASIC14.85□□□□□ -0.03
LIM2P55344 LINC01812-201ENST00000457448 725 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LIM2P55344 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIM2P55344 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC14.85□□□□□ -0.03
LIM2P55344 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC14.85□□□□□ -0.03
LIM2P55344 AC104794.3-201ENST00000566840 1248 ntBASIC14.85□□□□□ -0.03
LIM2P55344 HCFC1R1-203ENST00000572355 610 ntTSL 3 BASIC14.85□□□□□ -0.03
LIM2P55344 RNA5-8SN1-201ENST00000610460 153 ntBASIC14.85□□□□□ -0.03
LIM2P55344 RNA5-8SN5-202ENST00000612463 153 ntBASIC14.85□□□□□ -0.03
LIM2P55344 RNA5-8SN4-201ENST00000613359 153 ntBASIC14.85□□□□□ -0.03
LIM2P55344 RNA5-8SN5-201ENST00000619471 153 ntBASIC14.85□□□□□ -0.03
LIM2P55344 CREB3L2-208ENST00000620715 1053 ntTSL 5 BASIC14.85□□□□□ -0.03
LIM2P55344 WASHC2C-202ENST00000359860 4471 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
LIM2P55344 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC14.85□□□□□ -0.03
LIM2P55344 NR1H3-235ENST00000616973 1919 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LIM2P55344 ALPI-201ENST00000295463 2550 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIM2P55344 UBL7-209ENST00000567435 1720 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIM2P55344 FLAD1-201ENST00000292180 2160 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LIM2P55344 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.85□□□□□ -0.03
LIM2P55344 ACY3-201ENST00000255082 1300 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIM2P55344 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIM2P55344 PDE8B-204ENST00000342343 2677 ntAPPRIS ALT2 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIM2P55344 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LIM2P55344 ZCCHC18-203ENST00000537356 2907 ntAPPRIS P1 TSL 5 BASIC14.85□□□□□ -0.03
LIM2P55344 LINC01267-201ENST00000502417 2284 ntTSL 2 BASIC14.85□□□□□ -0.03
LIM2P55344 CTNND2-214ENST00000511377 4336 ntTSL 1 (best) BASIC14.85□□□□□ -0.03
LIM2P55344 C11orf80-201ENST00000360962 1807 ntAPPRIS ALT2 TSL 5 BASIC14.85□□□□□ -0.03
LIM2P55344 FBXO45-202ENST00000440469 3689 ntTSL 2 BASIC14.85□□□□□ -0.03
LIM2P55344 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC14.85□□□□□ -0.03
LIM2P55344 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC14.84□□□□□ -0.03
LIM2P55344 SPRY1-207ENST00000610581 2608 ntAPPRIS P1 TSL 3 BASIC14.84□□□□□ -0.03
LIM2P55344 FUT3-209ENST00000589918 2182 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LIM2P55344 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC14.84□□□□□ -0.03
LIM2P55344 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC14.84□□□□□ -0.03
LIM2P55344 VGLL2-202ENST00000352536 1709 ntTSL 1 (best) BASIC14.84□□□□□ -0.03
LIM2P55344 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LIM2P55344 FOXH1-201ENST00000377317 2503 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
LIM2P55344 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC14.84□□□□□ -0.03
Retrieved 100 of 98,524 protein–RNA pairs in 28.2 ms