Protein–RNA interactions for Protein: P41235

HNF4A, Hepatocyte nuclear factor 4-alpha, humanhuman

Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HNF4AP41235 MAGEA8-201ENST00000286482 1778 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HNF4AP41235 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC15.25■□□□□ 0.03
HNF4AP41235 TBC1D22A-205ENST00000406733 2267 ntTSL 2 BASIC15.25■□□□□ 0.03
HNF4AP41235 EML4-201ENST00000318522 5549 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
HNF4AP41235 TMEM25-206ENST00000442938 2228 ntTSL 2 BASIC15.25■□□□□ 0.03
HNF4AP41235 AC013268.4-201ENST00000637413 2228 ntBASIC15.25■□□□□ 0.03
HNF4AP41235 SELENOV-201ENST00000335426 1704 ntAPPRIS P1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HNF4AP41235 RECQL5-202ENST00000340830 1749 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HNF4AP41235 SELENOV-205ENST00000622070 1704 ntTSL 5 BASIC15.25■□□□□ 0.03
HNF4AP41235 CNTNAP3-202ENST00000358144 4885 ntTSL 5 BASIC15.25■□□□□ 0.03
HNF4AP41235 MAMLD1-203ENST00000370401 4854 ntAPPRIS P3 TSL 5 BASIC15.25■□□□□ 0.03
HNF4AP41235 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
HNF4AP41235 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.25■□□□□ 0.03
HNF4AP41235 PITX2-204ENST00000394595 1693 ntTSL 5 BASIC15.25■□□□□ 0.03
HNF4AP41235 MAGI1-216ENST00000497477 3555 ntTSL 5 BASIC15.25■□□□□ 0.03
HNF4AP41235 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC15.25■□□□□ 0.03
HNF4AP41235 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC15.25■□□□□ 0.03
HNF4AP41235 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC15.25■□□□□ 0.03
HNF4AP41235 ECE1-204ENST00000415912 5099 ntAPPRIS ALT1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HNF4AP41235 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC15.24■□□□□ 0.03
HNF4AP41235 IL11RA-215ENST00000602473 1388 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HNF4AP41235 CES4A-207ENST00000540947 2284 ntAPPRIS P2 TSL 2 BASIC15.24■□□□□ 0.03
HNF4AP41235 SLC20A1-201ENST00000272542 3381 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HNF4AP41235 MKRN3-203ENST00000568252 1312 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HNF4AP41235 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
HNF4AP41235 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC15.24■□□□□ 0.03
HNF4AP41235 MAP3K4-202ENST00000366919 5397 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
HNF4AP41235 TLE4-204ENST00000376537 2793 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HNF4AP41235 SRP19-201ENST00000282999 937 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HNF4AP41235 MRPL55-201ENST00000295008 632 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
HNF4AP41235 C1QA-201ENST00000374642 1143 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HNF4AP41235 NME2-201ENST00000393183 568 ntTSL 2 BASIC15.24■□□□□ 0.03
HNF4AP41235 PNMT-202ENST00000394246 821 ntTSL 2 BASIC15.24■□□□□ 0.03
HNF4AP41235 RPL37AP1-201ENST00000412502 279 ntBASIC15.24■□□□□ 0.03
HNF4AP41235 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC15.24■□□□□ 0.03
HNF4AP41235 ARHGAP11B-201ENST00000428041 1017 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HNF4AP41235 AC092809.2-202ENST00000436706 790 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HNF4AP41235 AL121753.1-201ENST00000444717 529 ntAPPRIS P1 TSL 3 BASIC15.24■□□□□ 0.03
HNF4AP41235 PTK7-212ENST00000476760 902 ntTSL 2 BASIC15.24■□□□□ 0.03
HNF4AP41235 AC008406.2-201ENST00000507058 532 ntTSL 3 BASIC15.24■□□□□ 0.03
HNF4AP41235 AC133919.2-202ENST00000563515 416 ntTSL 3 BASIC15.24■□□□□ 0.03
HNF4AP41235 AC140878.1-201ENST00000565277 250 ntBASIC15.24■□□□□ 0.03
HNF4AP41235 AL031717.1-201ENST00000569670 565 ntTSL 4 BASIC15.24■□□□□ 0.03
HNF4AP41235 ZNF550-208ENST00000601415 515 ntTSL 4 BASIC15.24■□□□□ 0.03
HNF4AP41235 SWI5-206ENST00000608796 906 ntAPPRIS ALT2 TSL 1 (best) BASIC15.24■□□□□ 0.03
HNF4AP41235 COQ4-205ENST00000609948 956 ntTSL 2 BASIC15.24■□□□□ 0.03
HNF4AP41235 AL138828.2-201ENST00000615812 383 ntBASIC15.24■□□□□ 0.03
HNF4AP41235 FAM92A-219ENST00000620645 1014 ntAPPRIS ALT2 TSL 5 BASIC15.24■□□□□ 0.03
HNF4AP41235 SLC35F2-204ENST00000525815 3170 ntAPPRIS P2 TSL 1 (best) BASIC15.24■□□□□ 0.03
HNF4AP41235 KLK3-202ENST00000360617 1664 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HNF4AP41235 ESR2-209ENST00000555278 1883 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HNF4AP41235 RABGAP1L-201ENST00000251507 2899 ntAPPRIS P1 TSL 2 BASIC15.24■□□□□ 0.03
HNF4AP41235 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC15.24■□□□□ 0.03
HNF4AP41235 PXN-201ENST00000228307 3785 ntAPPRIS P4 TSL 1 (best) BASIC15.24■□□□□ 0.03
HNF4AP41235 BCAR3-201ENST00000260502 3171 ntAPPRIS P1 TSL 1 (best) BASIC15.24■□□□□ 0.03
HNF4AP41235 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC15.24■□□□□ 0.03
HNF4AP41235 AL607033.1-201ENST00000623900 1599 ntBASIC15.24■□□□□ 0.03
HNF4AP41235 PCYOX1L-201ENST00000274569 2546 ntAPPRIS P1 TSL 2 BASIC15.23■□□□□ 0.03
HNF4AP41235 SGK2-206ENST00000423407 1915 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HNF4AP41235 FBXL12-208ENST00000589626 1920 ntTSL 2 BASIC15.23■□□□□ 0.03
HNF4AP41235 SLC5A7-201ENST00000264047 5152 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HNF4AP41235 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC15.23■□□□□ 0.03
HNF4AP41235 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC15.23■□□□□ 0.03
HNF4AP41235 CALCB-202ENST00000523376 2258 ntTSL 2 BASIC15.23■□□□□ 0.03
HNF4AP41235 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HNF4AP41235 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HNF4AP41235 CAMKK2-203ENST00000347034 5218 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
HNF4AP41235 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
HNF4AP41235 NCKIPSD-201ENST00000294129 2989 ntAPPRIS P3 TSL 1 (best) BASIC15.23■□□□□ 0.03
HNF4AP41235 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HNF4AP41235 API5-202ENST00000420461 2009 ntTSL 2 BASIC15.23■□□□□ 0.03
HNF4AP41235 ZNF219-202ENST00000421093 2908 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HNF4AP41235 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HNF4AP41235 ALOX15B-204ENST00000572022 2396 ntTSL 2 BASIC15.23■□□□□ 0.03
HNF4AP41235 FLAD1-205ENST00000368431 1803 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HNF4AP41235 CNN1-210ENST00000592923 1848 ntTSL 2 BASIC15.23■□□□□ 0.03
HNF4AP41235 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.23■□□□□ 0.03
HNF4AP41235 PAM16-201ENST00000318059 587 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HNF4AP41235 EFNA4-201ENST00000359751 1096 ntAPPRIS ALT2 TSL 1 (best) BASIC15.23■□□□□ 0.03
HNF4AP41235 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HNF4AP41235 CENPM-205ENST00000404067 905 ntTSL 3 BASIC15.23■□□□□ 0.03
HNF4AP41235 SERBP1P3-201ENST00000459980 809 ntBASIC15.23■□□□□ 0.03
HNF4AP41235 AC009720.1-201ENST00000511867 586 ntTSL 2 BASIC15.23■□□□□ 0.03
HNF4AP41235 UBE2V2-201ENST00000517630 612 ntTSL 4 BASIC15.23■□□□□ 0.03
HNF4AP41235 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC15.23■□□□□ 0.03
HNF4AP41235 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC15.23■□□□□ 0.03
HNF4AP41235 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HNF4AP41235 AP3S2-204ENST00000558011 738 ntTSL 3 BASIC15.23■□□□□ 0.03
HNF4AP41235 MIR6069-201ENST00000620069 79 ntBASIC15.23■□□□□ 0.03
HNF4AP41235 AC073592.8-201ENST00000624126 511 ntBASIC15.23■□□□□ 0.03
HNF4AP41235 ZNF367-201ENST00000375256 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HNF4AP41235 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC15.23■□□□□ 0.03
HNF4AP41235 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HNF4AP41235 DUSP6-202ENST00000308385 1959 ntTSL 1 (best) BASIC15.23■□□□□ 0.03
HNF4AP41235 GSN-206ENST00000394353 2311 ntTSL 2 BASIC15.23■□□□□ 0.03
HNF4AP41235 MMP25-201ENST00000336577 3554 ntAPPRIS P1 TSL 1 (best) BASIC15.23■□□□□ 0.03
HNF4AP41235 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC15.23■□□□□ 0.03
HNF4AP41235 ARHGEF1-219ENST00000599846 3393 ntAPPRIS ALT2 TSL 5 BASIC15.23■□□□□ 0.03
HNF4AP41235 KAT7-210ENST00000509773 1774 ntTSL 2 BASIC15.23■□□□□ 0.03
HNF4AP41235 EPS15L1-207ENST00000594975 2489 ntTSL 2 BASIC15.23■□□□□ 0.03
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms