Protein–RNA interactions for Protein: P41225

SOX3, Transcription factor SOX-3, humanhuman

Predictions only

Length 446 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX3P41225 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SOX3P41225 SPDYE2B-203ENST00000507450 1742 ntAPPRIS P2 TSL 2 BASIC14.8□□□□□ -0.04
SOX3P41225 SPDYE2-203ENST00000507918 1742 ntAPPRIS P2 TSL 2 BASIC14.8□□□□□ -0.04
SOX3P41225 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC14.8□□□□□ -0.04
SOX3P41225 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SOX3P41225 DEGS1-201ENST00000323699 2101 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SOX3P41225 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC14.8□□□□□ -0.04
SOX3P41225 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC14.8□□□□□ -0.04
SOX3P41225 CRYZL1-202ENST00000361534 2224 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SOX3P41225 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC14.8□□□□□ -0.04
SOX3P41225 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
SOX3P41225 MCHR2-201ENST00000281806 2368 ntAPPRIS P1 TSL 2 BASIC14.8□□□□□ -0.04
SOX3P41225 DEPDC5-203ENST00000400242 2395 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
SOX3P41225 DMTN-204ENST00000415253 2394 ntTSL 5 BASIC14.8□□□□□ -0.04
SOX3P41225 USP27X-201ENST00000621775 2618 ntAPPRIS P1 BASIC14.79□□□□□ -0.04
SOX3P41225 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC14.79□□□□□ -0.04
SOX3P41225 SHISA2-201ENST00000319420 2860 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SOX3P41225 ANKRD33B-201ENST00000296657 9188 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
SOX3P41225 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
SOX3P41225 LRFN1-201ENST00000248668 3381 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SOX3P41225 MTCL1-203ENST00000400050 6042 ntAPPRIS P2 TSL 5 BASIC14.79□□□□□ -0.04
SOX3P41225 DHODH-201ENST00000219240 2426 ntAPPRIS P2 TSL 1 (best) BASIC14.79□□□□□ -0.04
SOX3P41225 COX6A1-201ENST00000229379 572 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SOX3P41225 PSMF1-201ENST00000246015 2042 ntAPPRIS ALT1 TSL 3 BASIC14.79□□□□□ -0.04
SOX3P41225 SIK1-201ENST00000270162 4712 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SOX3P41225 CCDC105-201ENST00000292574 1732 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SOX3P41225 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC14.79□□□□□ -0.04
SOX3P41225 KLK8-202ENST00000320838 456 ntTSL 5 BASIC14.79□□□□□ -0.04
SOX3P41225 AC073349.1-201ENST00000340779 1062 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SOX3P41225 CISH-201ENST00000348721 2043 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SOX3P41225 PTBP1-201ENST00000349038 3155 ntAPPRIS P3 TSL 1 (best) BASIC14.79□□□□□ -0.04
SOX3P41225 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SOX3P41225 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SOX3P41225 BRF1-203ENST00000379937 3314 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SOX3P41225 PTBP1-204ENST00000394601 3185 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SOX3P41225 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC14.79□□□□□ -0.04
SOX3P41225 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC14.79□□□□□ -0.04
SOX3P41225 AC016735.2-201ENST00000438736 569 ntTSL 4 BASIC14.79□□□□□ -0.04
SOX3P41225 LINC01160-201ENST00000441004 768 ntTSL 3 BASIC14.79□□□□□ -0.04
SOX3P41225 AL606760.1-201ENST00000458151 1181 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SOX3P41225 UBE2H-204ENST00000473814 535 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SOX3P41225 AC019103.1-201ENST00000503095 272 ntTSL 3 BASIC14.79□□□□□ -0.04
SOX3P41225 WDR70-202ENST00000504564 1526 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SOX3P41225 CLDND1-222ENST00000510545 2124 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
SOX3P41225 HEY1-208ENST00000523976 1325 ntTSL 2 BASIC14.79□□□□□ -0.04
SOX3P41225 PUF60-208ENST00000526683 2412 ntAPPRIS P4 TSL 1 (best) BASIC14.79□□□□□ -0.04
SOX3P41225 BRK1-201ENST00000530758 1233 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SOX3P41225 TMEM63A-209ENST00000537914 1018 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SOX3P41225 STOM-203ENST00000538954 1257 ntTSL 5 BASIC14.79□□□□□ -0.04
SOX3P41225 AC243562.2-201ENST00000561247 970 ntBASIC14.79□□□□□ -0.04
SOX3P41225 AC010336.2-201ENST00000564226 506 ntBASIC14.79□□□□□ -0.04
SOX3P41225 AC009407.1-201ENST00000568958 598 ntBASIC14.79□□□□□ -0.04
SOX3P41225 AC087392.4-201ENST00000574560 486 ntTSL 3 BASIC14.79□□□□□ -0.04
SOX3P41225 LINC00207-204ENST00000605505 666 ntTSL 1 (best) BASIC14.79□□□□□ -0.04
SOX3P41225 AC008738.7-201ENST00000609744 511 ntBASIC14.79□□□□□ -0.04
SOX3P41225 CU639417.2-201ENST00000613488 4705 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SOX3P41225 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC14.79□□□□□ -0.04
SOX3P41225 AC005622.1-202ENST00000637093 1543 ntTSL 5 BASIC14.79□□□□□ -0.04
SOX3P41225 AL033527.5-202ENST00000641632 1098 ntBASIC14.79□□□□□ -0.04
SOX3P41225 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC14.79□□□□□ -0.04
SOX3P41225 LZTS1-202ENST00000381569 5706 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
SOX3P41225 PTPRH-201ENST00000263434 3343 ntAPPRIS ALT2 TSL 1 (best) BASIC14.79□□□□□ -0.04
SOX3P41225 TTC22-202ENST00000371276 3345 ntAPPRIS P1 TSL 5 BASIC14.79□□□□□ -0.04
SOX3P41225 RNF135-202ENST00000328381 2892 ntAPPRIS P1 TSL 1 (best) BASIC14.79□□□□□ -0.04
SOX3P41225 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC14.79□□□□□ -0.04
SOX3P41225 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SOX3P41225 SLC16A3-211ENST00000581287 4830 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SOX3P41225 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC14.78□□□□□ -0.04
SOX3P41225 SLC29A1-203ENST00000371724 2275 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
SOX3P41225 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
SOX3P41225 ATP11A-AS1-201ENST00000446442 2192 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SOX3P41225 CSAD-202ENST00000379843 2086 ntTSL 5 BASIC14.78□□□□□ -0.04
SOX3P41225 AC005253.1-201ENST00000597411 2001 ntTSL 4 BASIC14.78□□□□□ -0.04
SOX3P41225 SMARCD2-202ENST00000323347 1935 ntTSL 2 BASIC14.78□□□□□ -0.04
SOX3P41225 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC14.78□□□□□ -0.04
SOX3P41225 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SOX3P41225 JRK-210ENST00000614134 8932 ntAPPRIS P4 TSL 1 (best) BASIC14.78□□□□□ -0.04
SOX3P41225 SLC17A3-202ENST00000360657 1750 ntTSL 2 BASIC14.78□□□□□ -0.04
SOX3P41225 IL1RN-202ENST00000354115 1747 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SOX3P41225 FBXO44-204ENST00000376762 1734 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SOX3P41225 AL139082.1-201ENST00000613982 3433 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SOX3P41225 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC14.78□□□□□ -0.04
SOX3P41225 PGR-210ENST00000619228 3038 ntTSL 5 BASIC14.78□□□□□ -0.04
SOX3P41225 AC027601.1-201ENST00000575922 4506 ntTSL 2 BASIC14.78□□□□□ -0.04
SOX3P41225 HDHD3-202ENST00000374180 1497 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SOX3P41225 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SOX3P41225 EIF4G1-209ENST00000414031 5569 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SOX3P41225 DUSP26-203ENST00000523956 1373 ntAPPRIS P1 TSL 5 BASIC14.78□□□□□ -0.04
SOX3P41225 TDG-209ENST00000544861 1387 ntTSL 2 BASIC14.78□□□□□ -0.04
SOX3P41225 CIB3-201ENST00000269878 711 ntAPPRIS P1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SOX3P41225 ENDOV-201ENST00000323854 1226 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SOX3P41225 NNAT-202ENST00000346199 1209 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SOX3P41225 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SOX3P41225 HDAC8-203ENST00000373559 632 ntTSL 2 BASIC14.78□□□□□ -0.04
SOX3P41225 HDAC8-208ENST00000373583 434 ntTSL 5 BASIC14.78□□□□□ -0.04
SOX3P41225 GUK1-210ENST00000391865 990 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.04
SOX3P41225 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SOX3P41225 PABPN1L-201ENST00000411789 873 ntTSL 1 (best) BASIC14.78□□□□□ -0.04
SOX3P41225 FAM207CP-201ENST00000443486 507 ntBASIC14.78□□□□□ -0.04
SOX3P41225 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC14.78□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms