Protein–RNA interactions for Protein: P28360

MSX1, Homeobox protein MSX-1, humanhuman

Predictions only

Length 303 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSX1P28360 CYP4F2-202ENST00000221700 2407 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 KRT2-201ENST00000309680 2403 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC14.36□□□□□ -0.11
MSX1P28360 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 COBL-203ENST00000395542 5339 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 FKBP6-202ENST00000413573 1507 ntTSL 5 BASIC14.36□□□□□ -0.11
MSX1P28360 CARMIL3-201ENST00000342740 4597 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
MSX1P28360 FRA10AC1-201ENST00000359204 3089 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 LINC01502-201ENST00000445997 2471 ntTSL 2 BASIC14.36□□□□□ -0.11
MSX1P28360 RUFY2-203ENST00000388768 4502 ntTSL 2 BASIC14.36□□□□□ -0.11
MSX1P28360 ADM-201ENST00000278175 1885 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 CHST10-201ENST00000264249 2842 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 C7orf31-201ENST00000283905 2673 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 SYNM-201ENST00000328642 3960 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 FAM166B-201ENST00000399742 958 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 MAGEC1-202ENST00000406005 1084 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.36□□□□□ -0.11
MSX1P28360 HCG24-202ENST00000414398 717 ntTSL 3 BASIC14.36□□□□□ -0.11
MSX1P28360 AC093151.3-201ENST00000425554 623 ntTSL 2 BASIC14.36□□□□□ -0.11
MSX1P28360 RPL13P2-201ENST00000440687 659 ntBASIC14.36□□□□□ -0.11
MSX1P28360 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC14.36□□□□□ -0.11
MSX1P28360 AC073130.2-202ENST00000444244 842 ntTSL 3 BASIC14.36□□□□□ -0.11
MSX1P28360 ZSCAN2-213ENST00000541040 965 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 RNASEK-C17orf49-201ENST00000547302 900 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
MSX1P28360 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
MSX1P28360 AC092337.1-201ENST00000568699 1129 ntBASIC14.36□□□□□ -0.11
MSX1P28360 AC129507.1-201ENST00000570711 1013 ntTSL 2 BASIC14.36□□□□□ -0.11
MSX1P28360 ACAP1-208ENST00000574499 412 ntTSL 2 BASIC14.36□□□□□ -0.11
MSX1P28360 DUSP13-214ENST00000607131 1019 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 AL031056.2-201ENST00000637957 1217 ntTSL 5 BASIC14.36□□□□□ -0.11
MSX1P28360 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 TKT-202ENST00000423516 2075 ntTSL 2 BASIC14.36□□□□□ -0.11
MSX1P28360 KIFC1-211ENST00000428849 2706 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 CYP11A1-201ENST00000268053 1934 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 FOXRED2-204ENST00000397224 4967 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 PAK4-208ENST00000599386 5735 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 SIPA1-201ENST00000394224 3628 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 ALPPL2-201ENST00000295453 2493 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 MAPT-215ENST00000574436 1326 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
MSX1P28360 IDH3G-212ENST00000619865 1339 ntTSL 5 BASIC14.36□□□□□ -0.11
MSX1P28360 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC14.36□□□□□ -0.11
MSX1P28360 MON1B-203ENST00000545553 1814 ntTSL 2 BASIC14.36□□□□□ -0.11
MSX1P28360 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC14.36□□□□□ -0.11
MSX1P28360 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 FZD5-201ENST00000295417 6708 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 MYH14-204ENST00000440075 4247 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
MSX1P28360 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.36□□□□□ -0.11
MSX1P28360 ADAMTS13-201ENST00000355699 4442 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
MSX1P28360 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MSX1P28360 LINC02551-202ENST00000533812 2203 ntTSL 5 BASIC14.35□□□□□ -0.11
MSX1P28360 TDH-201ENST00000525246 1357 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
MSX1P28360 TXNDC11-201ENST00000283033 3140 ntAPPRIS P3 TSL 2 BASIC14.35□□□□□ -0.11
MSX1P28360 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC14.35□□□□□ -0.11
MSX1P28360 SCRN1-205ENST00000425819 1552 ntTSL 2 BASIC14.35□□□□□ -0.11
MSX1P28360 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC14.35□□□□□ -0.11
MSX1P28360 RASA4-201ENST00000262940 5605 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
MSX1P28360 ANXA6-211ENST00000521512 1793 ntTSL 5 BASIC14.35□□□□□ -0.11
MSX1P28360 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
MSX1P28360 ATG10-202ENST00000355178 1438 ntTSL 2 BASIC14.35□□□□□ -0.11
MSX1P28360 AC007950.2-201ENST00000615045 2347 ntBASIC14.35□□□□□ -0.11
MSX1P28360 TUBB3-206ENST00000554444 1978 ntTSL 2 BASIC14.35□□□□□ -0.11
MSX1P28360 ADRA1A-204ENST00000380573 2548 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
MSX1P28360 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MSX1P28360 TMEM127-202ENST00000432959 3099 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MSX1P28360 SUCLA2-201ENST00000378654 2192 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MSX1P28360 PITPNM3-201ENST00000262483 7086 ntAPPRIS P3 TSL 1 (best) BASIC14.35□□□□□ -0.11
MSX1P28360 SS18L2-201ENST00000011691 781 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MSX1P28360 TEX12-201ENST00000280358 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.35□□□□□ -0.11
MSX1P28360 IFT20-203ENST00000395418 825 ntAPPRIS P4 TSL 1 (best) BASIC14.35□□□□□ -0.11
MSX1P28360 DGCR5-201ENST00000399539 862 ntBASIC14.35□□□□□ -0.11
MSX1P28360 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC14.35□□□□□ -0.11
MSX1P28360 AL157935.1-209ENST00000415141 1105 ntTSL 2 BASIC14.35□□□□□ -0.11
MSX1P28360 AC074338.1-201ENST00000416825 156 ntBASIC14.35□□□□□ -0.11
MSX1P28360 RAD18-204ENST00000418463 563 ntTSL 4 BASIC14.35□□□□□ -0.11
MSX1P28360 RAD18-205ENST00000421052 582 ntTSL 3 BASIC14.35□□□□□ -0.11
MSX1P28360 GNAQP1-201ENST00000444815 1067 ntBASIC14.35□□□□□ -0.11
MSX1P28360 ELFN1-AS1-202ENST00000453348 637 ntTSL 1 (best) BASIC14.35□□□□□ -0.11
MSX1P28360 INE1-201ENST00000456273 945 ntBASIC14.35□□□□□ -0.11
MSX1P28360 RN7SL752P-201ENST00000463779 287 ntBASIC14.35□□□□□ -0.11
MSX1P28360 DNAJC19-208ENST00000486355 828 ntTSL 2 BASIC14.35□□□□□ -0.11
MSX1P28360 DNAJC19-209ENST00000491873 769 ntTSL 2 BASIC14.35□□□□□ -0.11
MSX1P28360 AC093004.1-201ENST00000508850 424 ntBASIC14.35□□□□□ -0.11
MSX1P28360 AC068228.2-201ENST00000522383 777 ntTSL 3 BASIC14.35□□□□□ -0.11
MSX1P28360 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.35□□□□□ -0.11
MSX1P28360 RAB35-202ENST00000534951 939 ntTSL 2 BASIC14.35□□□□□ -0.11
MSX1P28360 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.35□□□□□ -0.11
MSX1P28360 POLE2-203ENST00000553805 496 ntTSL 2 BASIC14.35□□□□□ -0.11
MSX1P28360 LINC01975-201ENST00000571890 549 ntTSL 4 BASIC14.35□□□□□ -0.11
MSX1P28360 IFT20-216ENST00000588477 774 ntTSL 5 BASIC14.35□□□□□ -0.11
MSX1P28360 IGHV3-72-202ENST00000621503 303 ntBASIC14.35□□□□□ -0.11
MSX1P28360 AC004461.2-201ENST00000629517 803 ntBASIC14.35□□□□□ -0.11
MSX1P28360 PCSK6-221ENST00000632686 1210 ntTSL 5 BASIC14.35□□□□□ -0.11
MSX1P28360 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC14.35□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 43 ms