Protein–RNA interactions for Protein: P18827

SDC1, Syndecan-1, humanhuman

Predictions only

Length 310 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDC1P18827 KCTD1-203ENST00000417602 1705 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
SDC1P18827 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC14.92□□□□□ -0.02
SDC1P18827 SFRP4-201ENST00000436072 2966 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SDC1P18827 ZFAND6-201ENST00000261749 1814 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SDC1P18827 WASHC2C-208ENST00000537517 4417 ntAPPRIS ALT2 TSL 2 BASIC14.92□□□□□ -0.02
SDC1P18827 MAPK13-203ENST00000373766 6196 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SDC1P18827 SIK3-205ENST00000446921 3858 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
SDC1P18827 NFKB2-203ENST00000369966 3101 ntAPPRIS P4 TSL 1 (best) BASIC14.92□□□□□ -0.02
SDC1P18827 RASGRF1-202ENST00000419573 6294 ntTSL 2 BASIC14.92□□□□□ -0.02
SDC1P18827 CTRB2-201ENST00000303037 901 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SDC1P18827 NFU1-201ENST00000303698 1034 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
SDC1P18827 FKBP2-201ENST00000309366 657 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SDC1P18827 LSM1-201ENST00000311351 1147 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SDC1P18827 HFE-208ENST00000397022 1280 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SDC1P18827 GNB2-205ENST00000419828 1285 ntTSL 5 BASIC14.92□□□□□ -0.02
SDC1P18827 SPDYE7P-202ENST00000420373 878 ntBASIC14.92□□□□□ -0.02
SDC1P18827 AL121832.1-203ENST00000433121 475 ntTSL 3 BASIC14.92□□□□□ -0.02
SDC1P18827 LINC01983-203ENST00000444346 519 ntTSL 2 BASIC14.92□□□□□ -0.02
SDC1P18827 CD28-203ENST00000458610 705 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SDC1P18827 SSNA1-204ENST00000464553 723 ntTSL 2 BASIC14.92□□□□□ -0.02
SDC1P18827 HFE-214ENST00000488199 781 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SDC1P18827 AC026191.1-201ENST00000491930 829 ntTSL 3 BASIC14.92□□□□□ -0.02
SDC1P18827 AKR1E2-212ENST00000532248 844 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SDC1P18827 DRAM1-202ENST00000544152 1048 ntTSL 2 BASIC14.92□□□□□ -0.02
SDC1P18827 LHX5-AS1-201ENST00000551357 522 ntTSL 2 BASIC14.92□□□□□ -0.02
SDC1P18827 AC007216.4-201ENST00000574364 562 ntTSL 4 BASIC14.92□□□□□ -0.02
SDC1P18827 PDCD6-214ENST00000628729 1073 ntTSL 5 BASIC14.92□□□□□ -0.02
SDC1P18827 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SDC1P18827 ALDH3A1-202ENST00000395555 1495 ntTSL 3 BASIC14.92□□□□□ -0.02
SDC1P18827 RIBC2-202ENST00000614167 1479 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SDC1P18827 MROH4P-201ENST00000431302 1578 ntBASIC14.92□□□□□ -0.02
SDC1P18827 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC14.92□□□□□ -0.02
SDC1P18827 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC14.92□□□□□ -0.02
SDC1P18827 ZNF79-201ENST00000342483 2078 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SDC1P18827 ZNF586-201ENST00000391702 2265 ntTSL 2 BASIC14.92□□□□□ -0.02
SDC1P18827 NCK2-203ENST00000393349 2371 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SDC1P18827 FAM219A-206ENST00000379087 3573 ntAPPRIS ALT1 TSL 4 BASIC14.92□□□□□ -0.02
SDC1P18827 MARCKS-201ENST00000612661 4275 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SDC1P18827 ARID4B-202ENST00000349213 5811 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SDC1P18827 DIDO1-207ENST00000395343 8477 ntAPPRIS ALT2 TSL 1 (best) BASIC14.92□□□□□ -0.02
SDC1P18827 ZBED1P1-201ENST00000502364 1930 ntBASIC14.92□□□□□ -0.02
SDC1P18827 HM13-202ENST00000340852 1606 ntAPPRIS P1 TSL 1 (best) BASIC14.92□□□□□ -0.02
SDC1P18827 IDH3G-204ENST00000427365 1526 ntTSL 5 BASIC14.92□□□□□ -0.02
SDC1P18827 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC14.92□□□□□ -0.02
SDC1P18827 GREB1-205ENST00000389825 1315 ntTSL 1 (best) BASIC14.92□□□□□ -0.02
SDC1P18827 SERPINA3-203ENST00000467132 2660 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
SDC1P18827 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SDC1P18827 FGR-202ENST00000374004 2350 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SDC1P18827 AC013726.1-201ENST00000563747 2285 ntBASIC14.91□□□□□ -0.02
SDC1P18827 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
SDC1P18827 SLC2A11-203ENST00000345044 3219 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SDC1P18827 MUTYH-206ENST00000372115 1888 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SDC1P18827 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SDC1P18827 UHRF2-201ENST00000276893 3452 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SDC1P18827 NPBWR2-201ENST00000369768 1352 ntAPPRIS P1 BASIC14.91□□□□□ -0.02
SDC1P18827 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC14.91□□□□□ -0.02
SDC1P18827 PTPN13-204ENST00000436978 8573 ntAPPRIS P4 TSL 5 BASIC14.91□□□□□ -0.02
SDC1P18827 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SDC1P18827 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
SDC1P18827 AP001056.1-201ENST00000411956 821 ntTSL 3 BASIC14.91□□□□□ -0.02
SDC1P18827 RPP21-221ENST00000428040 594 ntTSL 2 BASIC14.91□□□□□ -0.02
SDC1P18827 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC14.91□□□□□ -0.02
SDC1P18827 PLAC9P1-202ENST00000433290 400 ntTSL 2 BASIC14.91□□□□□ -0.02
SDC1P18827 AL133481.1-201ENST00000438554 511 ntTSL 5 BASIC14.91□□□□□ -0.02
SDC1P18827 GSKIP-201ENST00000438650 2140 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
SDC1P18827 SATB1-217ENST00000493952 626 ntTSL 3 BASIC14.91□□□□□ -0.02
SDC1P18827 CNOT8-210ENST00000519404 945 ntTSL 2 BASIC14.91□□□□□ -0.02
SDC1P18827 CNOT8-214ENST00000520671 923 ntTSL 2 BASIC14.91□□□□□ -0.02
SDC1P18827 CNOT8-218ENST00000521583 1151 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SDC1P18827 DHDH-204ENST00000523250 634 ntTSL 5 BASIC14.91□□□□□ -0.02
SDC1P18827 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC14.91□□□□□ -0.02
SDC1P18827 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SDC1P18827 CCDC85C-204ENST00000555822 930 ntTSL 5 BASIC14.91□□□□□ -0.02
SDC1P18827 METTL23-203ENST00000586738 1059 ntTSL 5 BASIC14.91□□□□□ -0.02
SDC1P18827 METTL23-205ENST00000588302 925 ntTSL 5 BASIC14.91□□□□□ -0.02
SDC1P18827 AL589739.1-201ENST00000607720 493 ntBASIC14.91□□□□□ -0.02
SDC1P18827 CBY1-211ENST00000619293 1118 ntTSL 5 BASIC14.91□□□□□ -0.02
SDC1P18827 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SDC1P18827 STBD1-201ENST00000237642 3420 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SDC1P18827 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC14.91□□□□□ -0.02
SDC1P18827 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC14.91□□□□□ -0.02
SDC1P18827 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SDC1P18827 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SDC1P18827 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SDC1P18827 TBL3-205ENST00000568546 6803 ntAPPRIS P2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SDC1P18827 FAM45BP-202ENST00000592932 1624 ntBASIC14.91□□□□□ -0.02
SDC1P18827 PHF8-203ENST00000338946 4651 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
SDC1P18827 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SDC1P18827 AC063926.3-201ENST00000624734 5658 ntBASIC14.91□□□□□ -0.02
SDC1P18827 MGEA5-201ENST00000357797 3263 ntTSL 1 (best) BASIC14.91□□□□□ -0.02
SDC1P18827 ZBTB32-202ENST00000392197 2068 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
SDC1P18827 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.91□□□□□ -0.02
SDC1P18827 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC14.91□□□□□ -0.02
SDC1P18827 BCAR1-207ENST00000538440 3192 ntAPPRIS ALT2 TSL 2 BASIC14.91□□□□□ -0.02
SDC1P18827 OTOL1-201ENST00000327928 1434 ntAPPRIS P1 TSL 2 BASIC14.91□□□□□ -0.02
SDC1P18827 PLIN1-201ENST00000300055 2953 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SDC1P18827 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC14.91□□□□□ -0.02
SDC1P18827 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC14.91□□□□□ -0.02
SDC1P18827 ANO1-201ENST00000316296 2118 ntTSL 2 BASIC14.9□□□□□ -0.02
SDC1P18827 ASCL1-201ENST00000266744 2472 ntAPPRIS P1 TSL 1 (best) BASIC14.9□□□□□ -0.02
Retrieved 100 of 98,524 protein–RNA pairs in 45.4 ms