Protein–RNA interactions for Protein: P13611

VCAN, Versican core protein, humanhuman

Predictions only

Length 3,396 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VCANP13611 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC15.82■□□□□ 0.12
VCANP13611 JHDM1D-AS1-201ENST00000566699 2380 ntBASIC15.82■□□□□ 0.12
VCANP13611 AKR1B1-201ENST00000285930 1409 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VCANP13611 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VCANP13611 SUMO4-201ENST00000326669 1066 ntAPPRIS P1 BASIC15.82■□□□□ 0.12
VCANP13611 DIO1-203ENST00000388876 606 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VCANP13611 HNRNPA1P41-201ENST00000397777 928 ntBASIC15.82■□□□□ 0.12
VCANP13611 KLHL7-204ENST00000410047 1233 ntTSL 5 BASIC15.82■□□□□ 0.12
VCANP13611 TXNL4B-203ENST00000426362 965 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
VCANP13611 GTF2I-203ENST00000443166 979 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VCANP13611 AL391280.1-201ENST00000506969 1062 ntBASIC15.82■□□□□ 0.12
VCANP13611 POU5F1P2-201ENST00000521750 823 ntBASIC15.82■□□□□ 0.12
VCANP13611 DIO1-204ENST00000524406 626 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VCANP13611 DIO1-213ENST00000532493 406 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VCANP13611 AF111167.2-202ENST00000558267 599 ntTSL 4 BASIC15.82■□□□□ 0.12
VCANP13611 AP005899.1-201ENST00000579467 544 ntTSL 3 BASIC15.82■□□□□ 0.12
VCANP13611 CRK-202ENST00000398970 3675 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VCANP13611 TMED7-TICAM2-201ENST00000282382 3491 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
VCANP13611 MSMO1-202ENST00000393766 1789 ntTSL 2 BASIC15.82■□□□□ 0.12
VCANP13611 GOLGA2-213ENST00000610329 2212 ntTSL 2 BASIC15.82■□□□□ 0.12
VCANP13611 CNKSR1-214ENST00000531191 2673 ntTSL 5 BASIC15.82■□□□□ 0.12
VCANP13611 AP002414.2-201ENST00000591780 3365 ntBASIC15.82■□□□□ 0.12
VCANP13611 OASL-204ENST00000620239 1695 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VCANP13611 HNF1A-216ENST00000617366 2473 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
VCANP13611 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC15.82■□□□□ 0.12
VCANP13611 CKMT1B-201ENST00000300283 1779 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
VCANP13611 CKMT1A-204ENST00000434505 1779 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
VCANP13611 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VCANP13611 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC15.82■□□□□ 0.12
VCANP13611 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC15.82■□□□□ 0.12
VCANP13611 SUN1-204ENST00000403868 978 ntTSL 2 BASIC15.82■□□□□ 0.12
VCANP13611 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC15.82■□□□□ 0.12
VCANP13611 LINC02440-201ENST00000545276 680 ntTSL 2 BASIC15.82■□□□□ 0.12
VCANP13611 AL928654.3-201ENST00000552675 445 ntTSL 3 BASIC15.82■□□□□ 0.12
VCANP13611 HMGB1P24-201ENST00000611897 328 ntBASIC15.82■□□□□ 0.12
VCANP13611 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC15.82■□□□□ 0.12
VCANP13611 NPRL3-211ENST00000611875 2881 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
VCANP13611 SLC35G2-201ENST00000393079 1577 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VCANP13611 CELF2-206ENST00000608830 1892 ntAPPRIS ALT1 TSL 1 (best) BASIC15.82■□□□□ 0.12
VCANP13611 RAD1-202ENST00000341754 2341 ntAPPRIS P1 TSL 5 BASIC15.82■□□□□ 0.12
VCANP13611 MIR4683-201ENST00000579659 81 ntBASIC15.81■□□□□ 0.12
VCANP13611 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC15.81■□□□□ 0.12
VCANP13611 LINC01002-214ENST00000632102 561 ntTSL 4 BASIC15.81■□□□□ 0.12
VCANP13611 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.81■□□□□ 0.12
VCANP13611 UBL7-AS1-203ENST00000564621 1612 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VCANP13611 TAGLN3-201ENST00000273368 1349 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VCANP13611 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VCANP13611 AC026471.1-201ENST00000564629 3026 ntBASIC15.81■□□□□ 0.12
VCANP13611 LRRN2-203ENST00000367177 3463 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VCANP13611 FKBP6-204ENST00000431982 1446 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
VCANP13611 IL18BP-207ENST00000404792 2172 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
VCANP13611 PCBP4-203ENST00000428823 1835 ntTSL 5 BASIC15.81■□□□□ 0.12
VCANP13611 CHFR-203ENST00000432561 2648 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VCANP13611 CHRNG-202ENST00000389494 2262 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
VCANP13611 ATP6AP2-215ENST00000636409 1962 ntAPPRIS ALT2 TSL 2 BASIC15.81■□□□□ 0.12
VCANP13611 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VCANP13611 AL109741.1-201ENST00000432195 403 ntTSL 2 BASIC15.81■□□□□ 0.12
VCANP13611 UBXN7-AS1-201ENST00000442941 386 ntTSL 3 BASIC15.81■□□□□ 0.12
VCANP13611 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC15.81■□□□□ 0.12
VCANP13611 ZNF720-210ENST00000534369 791 ntTSL 3 BASIC15.81■□□□□ 0.12
VCANP13611 MIR5001-201ENST00000580185 100 ntBASIC15.81■□□□□ 0.12
VCANP13611 APH1A-203ENST00000369109 1713 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
VCANP13611 FAM49B-223ENST00000522746 2196 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VCANP13611 NR2E1-202ENST00000368986 3212 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VCANP13611 RTN1-201ENST00000267484 3435 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
VCANP13611 NTNG1-202ENST00000370065 1485 ntTSL 5 BASIC15.81■□□□□ 0.12
VCANP13611 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
VCANP13611 PRPF19-201ENST00000227524 2157 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VCANP13611 CCNI2-201ENST00000378731 2355 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
VCANP13611 ETNK2-203ENST00000367202 2434 ntAPPRIS P3 TSL 1 (best) BASIC15.81■□□□□ 0.12
VCANP13611 WDR54-201ENST00000348227 1147 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VCANP13611 CR769775.1-201ENST00000443347 931 ntTSL 3 BASIC15.81■□□□□ 0.12
VCANP13611 NDUFC1-210ENST00000539387 725 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
VCANP13611 MED11-202ENST00000573708 802 ntTSL 2 BASIC15.81■□□□□ 0.12
VCANP13611 ABCB9-207ENST00000442833 2587 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
VCANP13611 CXorf38-201ENST00000327877 2118 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
VCANP13611 ANKRD30BP2-201ENST00000435744 1610 ntBASIC15.8■□□□□ 0.12
VCANP13611 SPAG8-209ENST00000484764 1618 ntAPPRIS ALT2 TSL 5 BASIC15.8■□□□□ 0.12
VCANP13611 AL132857.2-201ENST00000634305 1737 ntTSL 5 BASIC15.8■□□□□ 0.12
VCANP13611 AC060834.1-201ENST00000443027 2032 ntBASIC15.8■□□□□ 0.12
VCANP13611 NEK2-202ENST00000366999 2131 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VCANP13611 AC104809.2-201ENST00000418218 2274 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VCANP13611 OR4S1-201ENST00000319988 930 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
VCANP13611 HIST1H2BJ-201ENST00000339812 381 ntAPPRIS P1 BASIC15.8■□□□□ 0.12
VCANP13611 AL691432.1-201ENST00000596308 1422 ntBASIC15.8■□□□□ 0.12
VCANP13611 CCDC121-202ENST00000394775 1472 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
VCANP13611 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
VCANP13611 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
VCANP13611 AC022188.1-201ENST00000620960 1664 ntBASIC15.8■□□□□ 0.12
VCANP13611 FLAD1-203ENST00000315144 1730 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VCANP13611 WT1-203ENST00000379079 2466 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VCANP13611 FAM214B-206ENST00000603301 3256 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VCANP13611 SLC12A9-201ENST00000354161 3273 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VCANP13611 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
VCANP13611 XPNPEP2-201ENST00000371105 912 ntTSL 2 BASIC15.8■□□□□ 0.12
VCANP13611 EPHX2-201ENST00000380476 2064 ntTSL 2 BASIC15.8■□□□□ 0.12
VCANP13611 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
VCANP13611 DAGLB-202ENST00000425398 2044 ntTSL 2 BASIC15.8■□□□□ 0.12
VCANP13611 CSHL1-205ENST00000438387 566 ntTSL 5 BASIC15.8■□□□□ 0.12
VCANP13611 RPL23A-206ENST00000496182 636 ntTSL 3 BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 41.8 ms