Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 DDOST-202ENST00000415136 2126 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A3P12111 FBXL20-202ENST00000394294 2309 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A3P12111 AC005392.1-201ENST00000419624 500 ntTSL 5 BASIC15.82■□□□□ 0.12
COL6A3P12111 AL121983.2-202ENST00000419983 535 ntTSL 3 BASIC15.82■□□□□ 0.12
COL6A3P12111 AHCYP3-201ENST00000420053 1279 ntBASIC15.82■□□□□ 0.12
COL6A3P12111 AL592076.1-201ENST00000424448 303 ntBASIC15.82■□□□□ 0.12
COL6A3P12111 AC117945.1-201ENST00000451375 463 ntTSL 3 BASIC15.82■□□□□ 0.12
COL6A3P12111 HIST1H2APS2-201ENST00000454426 370 ntBASIC15.82■□□□□ 0.12
COL6A3P12111 AC130456.3-201ENST00000561762 633 ntTSL 3 BASIC15.82■□□□□ 0.12
COL6A3P12111 PPCDC-205ENST00000563393 1149 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A3P12111 CDIPT-AS1-202ENST00000565014 729 ntTSL 2 BASIC15.82■□□□□ 0.12
COL6A3P12111 PPCDC-208ENST00000567336 892 ntTSL 5 BASIC15.82■□□□□ 0.12
COL6A3P12111 MGMT-201ENST00000306010 1759 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A3P12111 POLR1D-221ENST00000637180 2262 ntTSL 5 BASIC15.82■□□□□ 0.12
COL6A3P12111 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A3P12111 DCLK1-203ENST00000379892 2101 ntTSL 5 BASIC15.82■□□□□ 0.12
COL6A3P12111 DGKE-204ENST00000572810 1843 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A3P12111 KCTD6-202ENST00000404589 1533 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
COL6A3P12111 CTCFL-215ENST00000608158 1984 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A3P12111 SLC22A18AS-203ENST00000625099 1659 ntAPPRIS ALT2 TSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A3P12111 ABLIM2-203ENST00000361737 3396 ntAPPRIS ALT2 TSL 2 BASIC15.82■□□□□ 0.12
COL6A3P12111 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A3P12111 AK6-201ENST00000380818 1183 ntTSL 2 BASIC15.82■□□□□ 0.12
COL6A3P12111 TMEM95-202ENST00000389982 1191 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
COL6A3P12111 AP000487.1-202ENST00000500185 2602 ntTSL 2 BASIC15.82■□□□□ 0.12
COL6A3P12111 AC016396.2-201ENST00000562575 1417 ntBASIC15.82■□□□□ 0.12
COL6A3P12111 MUM1-216ENST00000627377 2235 ntAPPRIS ALT2 TSL 5 BASIC15.82■□□□□ 0.12
COL6A3P12111 PTP4A3-202ENST00000349124 2710 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A3P12111 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A3P12111 SHC1P1-201ENST00000425230 1745 ntBASIC15.81■□□□□ 0.12
COL6A3P12111 ETV2-201ENST00000379023 926 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A3P12111 PDCD5-202ENST00000379316 154 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A3P12111 AC016757.1-202ENST00000409376 892 ntTSL 3 BASIC15.81■□□□□ 0.12
COL6A3P12111 AC078875.1-201ENST00000431907 724 ntBASIC15.81■□□□□ 0.12
COL6A3P12111 RPL3P5-201ENST00000441645 1232 ntBASIC15.81■□□□□ 0.12
COL6A3P12111 NMNAT3-213ENST00000512391 794 ntTSL 3 BASIC15.81■□□□□ 0.12
COL6A3P12111 PDCD5-208ENST00000592786 468 ntTSL 3 BASIC15.81■□□□□ 0.12
COL6A3P12111 AL136040.2-201ENST00000618431 1130 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A3P12111 LINC01398-202ENST00000634819 1292 ntTSL 5 BASIC15.81■□□□□ 0.12
COL6A3P12111 AC055854.1-203ENST00000521141 1630 ntTSL 5 BASIC15.81■□□□□ 0.12
COL6A3P12111 PRODH-202ENST00000334029 1985 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A3P12111 PHB-210ENST00000511832 1509 ntTSL 2 BASIC15.81■□□□□ 0.12
COL6A3P12111 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A3P12111 IGLON5-201ENST00000270642 2606 ntAPPRIS P1 TSL 5 BASIC15.81■□□□□ 0.12
COL6A3P12111 AC144522.1-201ENST00000625111 1658 ntBASIC15.81■□□□□ 0.12
COL6A3P12111 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A3P12111 TTLL3-213ENST00000430793 2097 ntTSL 2 BASIC15.81■□□□□ 0.12
COL6A3P12111 GPSM3-207ENST00000375043 1456 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A3P12111 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A3P12111 LTF-202ENST00000417439 2130 ntAPPRIS ALT2 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A3P12111 FGFR4-207ENST00000502906 2638 ntAPPRIS P4 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A3P12111 TMSB15A-201ENST00000289373 685 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A3P12111 NCR3-202ENST00000376071 541 ntTSL 5 BASIC15.81■□□□□ 0.12
COL6A3P12111 AC097059.1-201ENST00000413103 885 ntTSL 5 BASIC15.81■□□□□ 0.12
COL6A3P12111 AC093627.2-201ENST00000497017 568 ntTSL 4 BASIC15.81■□□□□ 0.12
COL6A3P12111 DUX4L46-201ENST00000566845 751 ntBASIC15.81■□□□□ 0.12
COL6A3P12111 ERICH1-206ENST00000522706 1551 ntAPPRIS ALT2 TSL 5 BASIC15.81■□□□□ 0.12
COL6A3P12111 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC15.81■□□□□ 0.12
COL6A3P12111 VRK1-201ENST00000216639 1745 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A3P12111 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A3P12111 EZR-202ENST00000367075 3096 ntAPPRIS P2 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A3P12111 LINC00595-204ENST00000434974 2692 ntTSL 2 BASIC15.81■□□□□ 0.12
COL6A3P12111 CCNE1-202ENST00000357943 1641 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A3P12111 TRIML1-201ENST00000332517 1797 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A3P12111 PRPF39-201ENST00000355765 2868 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A3P12111 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC15.81■□□□□ 0.12
COL6A3P12111 AZGP1P1-202ENST00000425474 1181 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A3P12111 RHOQP2-201ENST00000449922 579 ntBASIC15.81■□□□□ 0.12
COL6A3P12111 KLHDC8A-203ENST00000460687 1022 ntTSL 5 BASIC15.81■□□□□ 0.12
COL6A3P12111 AC093826.1-201ENST00000508655 993 ntBASIC15.81■□□□□ 0.12
COL6A3P12111 CCKBR-204ENST00000531712 463 ntTSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A3P12111 TMEM101-204ENST00000587529 965 ntTSL 2 BASIC15.81■□□□□ 0.12
COL6A3P12111 AC017033.1-201ENST00000603720 708 ntTSL 2 BASIC15.81■□□□□ 0.12
COL6A3P12111 RNF216P1-203ENST00000404404 2427 ntBASIC15.81■□□□□ 0.12
COL6A3P12111 TMEFF2-201ENST00000272771 2604 ntAPPRIS P1 TSL 1 (best) BASIC15.81■□□□□ 0.12
COL6A3P12111 MAD2L1BP-201ENST00000372171 1301 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A3P12111 AC244394.1-201ENST00000435000 1665 ntBASIC15.8■□□□□ 0.12
COL6A3P12111 PIGT-207ENST00000543458 2037 ntTSL 2 BASIC15.8■□□□□ 0.12
COL6A3P12111 ASGR1-208ENST00000574388 1552 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A3P12111 STIM2-212ENST00000639640 2241 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A3P12111 OPN1SW-201ENST00000249389 1096 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A3P12111 IL37-204ENST00000352179 709 ntAPPRIS ALT2 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A3P12111 LINC01598-205ENST00000508763 719 ntTSL 5 BASIC15.8■□□□□ 0.12
COL6A3P12111 CRYAB-213ENST00000533475 1119 ntAPPRIS P1 TSL 5 BASIC15.8■□□□□ 0.12
COL6A3P12111 ZNF671-203ENST00000596939 977 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A3P12111 AC006986.1-201ENST00000612764 241 ntBASIC15.8■□□□□ 0.12
COL6A3P12111 LINC01588-216ENST00000623502 975 ntTSL 2 BASIC15.8■□□□□ 0.12
COL6A3P12111 AKIRIN1-202ENST00000432648 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A3P12111 ASPH-202ENST00000379449 1603 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A3P12111 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A3P12111 FAM9B-202ENST00000362066 2047 ntTSL 2 BASIC15.8■□□□□ 0.12
COL6A3P12111 BCAR1-201ENST00000162330 3221 ntAPPRIS P3 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A3P12111 CHRFAM7A-203ENST00000401522 1913 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A3P12111 Z98749.3-201ENST00000400206 1770 ntAPPRIS P1 TSL 2 BASIC15.8■□□□□ 0.12
COL6A3P12111 HS3ST2-201ENST00000261374 2314 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A3P12111 CDC25A-201ENST00000302506 3783 ntAPPRIS P1 TSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A3P12111 GSTP1-201ENST00000398603 700 ntTSL 3 BASIC15.8■□□□□ 0.12
COL6A3P12111 COLEC11-204ENST00000402794 1134 ntTSL 1 (best) BASIC15.8■□□□□ 0.12
COL6A3P12111 MFSD4A-207ENST00000536357 1841 ntTSL 2 BASIC15.8■□□□□ 0.12
COL6A3P12111 SHISA5-208ENST00000442747 2250 ntTSL 2 BASIC15.8■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 37.8 ms