Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AC003986.2-201ENST00000419944 1711 ntTSL 3 BASIC18.46■□□□□ 0.55
HMGB1P09429 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGB1P09429 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.55
HMGB1P09429 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC18.46■□□□□ 0.54
HMGB1P09429 DNAJC10-210ENST00000616986 5783 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB1P09429 RAD51-201ENST00000267868 2449 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB1P09429 GPRIN1-201ENST00000303991 4211 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB1P09429 TMEM184A-201ENST00000297477 6276 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB1P09429 SLC2A4-204ENST00000571308 1768 ntTSL 5 BASIC18.45■□□□□ 0.54
HMGB1P09429 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB1P09429 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC18.45■□□□□ 0.54
HMGB1P09429 ANKRD20A5P-207ENST00000581935 2089 ntTSL 2 BASIC18.45■□□□□ 0.54
HMGB1P09429 AL121723.1-201ENST00000445194 1519 ntBASIC18.45■□□□□ 0.54
HMGB1P09429 FAM19A3-202ENST00000369630 1282 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB1P09429 AC018685.2-201ENST00000414065 547 ntTSL 4 BASIC18.45■□□□□ 0.54
HMGB1P09429 AL161785.2-201ENST00000427080 966 ntTSL 3 BASIC18.45■□□□□ 0.54
HMGB1P09429 U52111.1-201ENST00000434284 914 ntTSL 3 BASIC18.45■□□□□ 0.54
HMGB1P09429 AP000721.1-201ENST00000535431 559 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
HMGB1P09429 NRK-203ENST00000536164 908 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB1P09429 WDR25-203ENST00000542471 1214 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB1P09429 TOMM5-205ENST00000544379 635 ntTSL 2 BASIC18.45■□□□□ 0.54
HMGB1P09429 AC009407.1-201ENST00000568958 598 ntBASIC18.45■□□□□ 0.54
HMGB1P09429 PRR29-204ENST00000577953 565 ntTSL 4 BASIC18.45■□□□□ 0.54
HMGB1P09429 UBL5-208ENST00000593087 320 ntTSL 3 BASIC18.45■□□□□ 0.54
HMGB1P09429 AL390754.1-201ENST00000619088 582 ntBASIC18.45■□□□□ 0.54
HMGB1P09429 AC004461.2-201ENST00000629517 803 ntBASIC18.45■□□□□ 0.54
HMGB1P09429 AMHR2-202ENST00000379791 1437 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB1P09429 PARP16-201ENST00000261888 2731 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB1P09429 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC18.45■□□□□ 0.54
HMGB1P09429 GLB1L2-201ENST00000339772 3152 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
HMGB1P09429 LINC00900-201ENST00000499809 3322 ntTSL 2 BASIC18.45■□□□□ 0.54
HMGB1P09429 M6PR-202ENST00000536844 2305 ntTSL 3 BASIC18.45■□□□□ 0.54
HMGB1P09429 FYCO1-205ENST00000535325 8578 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
HMGB1P09429 LSP1-204ENST00000406638 2640 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
HMGB1P09429 KIF5B-201ENST00000302418 5877 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB1P09429 IGHA1-202ENST00000641837 1310 ntAPPRIS P5 BASIC18.45■□□□□ 0.54
HMGB1P09429 BPGM-201ENST00000344924 1753 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB1P09429 RBM12-201ENST00000359646 5332 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB1P09429 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC18.45■□□□□ 0.54
HMGB1P09429 JAKMIP1-204ENST00000409831 2371 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
HMGB1P09429 ALOX15-205ENST00000574640 2422 ntTSL 2 BASIC18.44■□□□□ 0.54
HMGB1P09429 AC023024.2-201ENST00000623561 1993 ntBASIC18.44■□□□□ 0.54
HMGB1P09429 OGFOD2-202ENST00000397389 2308 ntTSL 2 BASIC18.44■□□□□ 0.54
HMGB1P09429 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
HMGB1P09429 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB1P09429 LRRC6-213ENST00000620350 1878 ntAPPRIS P2 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB1P09429 VANGL2-201ENST00000368061 5340 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
HMGB1P09429 ZSCAN32-205ENST00000439568 1746 ntTSL 2 BASIC18.44■□□□□ 0.54
HMGB1P09429 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB1P09429 GMNN-201ENST00000230056 1262 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB1P09429 DYNLL1-201ENST00000242577 720 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB1P09429 GYPC-201ENST00000259254 1246 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB1P09429 TFF2-201ENST00000291526 737 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB1P09429 STMN1-201ENST00000357865 1137 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
HMGB1P09429 MB-201ENST00000359787 1170 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
HMGB1P09429 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
HMGB1P09429 MB-202ENST00000397326 1197 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB1P09429 MB-203ENST00000397328 1153 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB1P09429 AC092183.1-201ENST00000469884 875 ntBASIC18.44■□□□□ 0.54
HMGB1P09429 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC18.44■□□□□ 0.54
HMGB1P09429 AC004890.2-204ENST00000481968 304 ntBASIC18.44■□□□□ 0.54
HMGB1P09429 LINC01605-204ENST00000522718 1093 ntTSL 3 BASIC18.44■□□□□ 0.54
HMGB1P09429 RAB35-202ENST00000534951 939 ntTSL 2 BASIC18.44■□□□□ 0.54
HMGB1P09429 AC243964.2-202ENST00000591312 752 ntTSL 2 BASIC18.44■□□□□ 0.54
HMGB1P09429 AL121832.1-201ENST00000615180 677 ntTSL 3 BASIC18.44■□□□□ 0.54
HMGB1P09429 AC093512.1-201ENST00000617969 520 ntBASIC18.44■□□□□ 0.54
HMGB1P09429 SCLT1-208ENST00000506368 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB1P09429 HMOX2-205ENST00000458134 1797 ntAPPRIS P1 TSL 5 BASIC18.44■□□□□ 0.54
HMGB1P09429 AL354813.1-201ENST00000526566 2437 ntTSL 5 BASIC18.44■□□□□ 0.54
HMGB1P09429 PACSIN2-204ENST00000403744 2110 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB1P09429 SH2D6-202ENST00000389938 1975 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB1P09429 TRA2B-205ENST00000453386 2952 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB1P09429 TOM1-201ENST00000382034 1300 ntTSL 5 BASIC18.44■□□□□ 0.54
HMGB1P09429 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC18.44■□□□□ 0.54
HMGB1P09429 SSFA2-202ENST00000409001 4987 ntAPPRIS ALT2 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB1P09429 BTD-207ENST00000449107 1820 ntAPPRIS P4 TSL 2 BASIC18.44■□□□□ 0.54
HMGB1P09429 PMP22-209ENST00000612492 1822 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
HMGB1P09429 TMEM40-202ENST00000314124 2308 ntAPPRIS P3 TSL 2 BASIC18.44■□□□□ 0.54
HMGB1P09429 LINC00221-201ENST00000603633 1656 ntTSL 2 BASIC18.44■□□□□ 0.54
HMGB1P09429 LINC00554-201ENST00000564841 3011 ntBASIC18.44■□□□□ 0.54
HMGB1P09429 C6orf106-203ENST00000374026 4232 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
HMGB1P09429 MANBAL-204ENST00000397151 1503 ntAPPRIS P1 TSL 3 BASIC18.44■□□□□ 0.54
HMGB1P09429 MANBAL-205ENST00000397152 1539 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB1P09429 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC18.44■□□□□ 0.54
HMGB1P09429 PARN-202ENST00000420015 2360 ntTSL 2 BASIC18.44■□□□□ 0.54
HMGB1P09429 GRID2IP-201ENST00000435185 3215 ntTSL 5 BASIC18.44■□□□□ 0.54
HMGB1P09429 CBARP-204ENST00000590083 4261 ntAPPRIS P2 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB1P09429 RHOBTB2-206ENST00000522948 4959 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
HMGB1P09429 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
HMGB1P09429 IRF9-203ENST00000557894 1391 ntTSL 5 BASIC18.43■□□□□ 0.54
HMGB1P09429 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB1P09429 TRPC6-203ENST00000360497 2631 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB1P09429 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
HMGB1P09429 MEX3A-202ENST00000532414 6124 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
HMGB1P09429 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC18.43■□□□□ 0.54
HMGB1P09429 TOPAZ1-201ENST00000309765 5334 ntAPPRIS P1 TSL 5 BASIC18.43■□□□□ 0.54
HMGB1P09429 OXA1L-203ENST00000412791 1440 ntTSL 5 BASIC18.43■□□□□ 0.54
HMGB1P09429 ZBTB37-203ENST00000367704 2323 ntTSL 2 BASIC18.43■□□□□ 0.54
HMGB1P09429 HIST2H3D-201ENST00000331491 411 ntAPPRIS P1 BASIC18.43■□□□□ 0.54
HMGB1P09429 POLR3GL-202ENST00000369314 1165 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 49.5 ms