Protein–RNA interactions for Protein: P02649

APOE, Apolipoprotein E, humanhuman

Predictions only

Length 317 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
APOEP02649 RNA5-8SN5-202ENST00000612463 153 ntBASIC16.45■□□□□ 0.22
APOEP02649 RNA5-8SN4-201ENST00000613359 153 ntBASIC16.45■□□□□ 0.22
APOEP02649 RNA5-8SN5-201ENST00000619471 153 ntBASIC16.45■□□□□ 0.22
APOEP02649 OARD1-216ENST00000628419 1188 ntTSL 5 BASIC16.45■□□□□ 0.22
APOEP02649 MAGI3-204ENST00000369617 3911 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
APOEP02649 TDG-209ENST00000544861 1387 ntTSL 2 BASIC16.45■□□□□ 0.22
APOEP02649 PPP1R26-206ENST00000605660 4502 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
APOEP02649 KCP-208ENST00000620378 4515 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
APOEP02649 IRF2BP2-202ENST00000366610 4615 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
APOEP02649 TMEM53-204ENST00000372243 1579 ntTSL 2 BASIC16.45■□□□□ 0.22
APOEP02649 CYB5R1-201ENST00000367249 1651 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
APOEP02649 PRSS54-204ENST00000567164 1799 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
APOEP02649 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC16.45■□□□□ 0.22
APOEP02649 CD5L-201ENST00000368174 2191 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
APOEP02649 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.45■□□□□ 0.22
APOEP02649 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
APOEP02649 SLC6A2-204ENST00000561820 2268 ntTSL 5 BASIC16.45■□□□□ 0.22
APOEP02649 BDP1-202ENST00000380675 2861 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
APOEP02649 PAXBP1-202ENST00000331923 3995 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
APOEP02649 WDTC1-202ENST00000361771 4275 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
APOEP02649 PTGFRN-201ENST00000393203 6178 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
APOEP02649 PRPF40B-201ENST00000261897 3602 ntAPPRIS ALT2 TSL 1 (best) BASIC16.45■□□□□ 0.22
APOEP02649 GTF2H1-203ENST00000453096 2707 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
APOEP02649 GATA4-206ENST00000528712 2614 ntTSL 2 BASIC16.45■□□□□ 0.22
APOEP02649 DPYSL3-201ENST00000343218 5476 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
APOEP02649 LINC00391-201ENST00000433569 1844 ntTSL 5 BASIC16.45■□□□□ 0.22
APOEP02649 MCF2L-232ENST00000535094 3752 ntAPPRIS ALT2 TSL 2 BASIC16.45■□□□□ 0.22
APOEP02649 NUTM2D-202ENST00000412718 5543 ntAPPRIS ALT2 TSL 5 BASIC16.44■□□□□ 0.22
APOEP02649 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
APOEP02649 MYEF2-201ENST00000267836 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
APOEP02649 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
APOEP02649 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
APOEP02649 C18orf25-203ENST00000615052 5462 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
APOEP02649 HGNC:18790-203ENST00000433139 2254 ntAPPRIS P1 TSL 2 BASIC16.44■□□□□ 0.22
APOEP02649 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
APOEP02649 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
APOEP02649 POLG2-201ENST00000539111 1564 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
APOEP02649 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
APOEP02649 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
APOEP02649 TM2D3-207ENST00000559107 1353 ntTSL 3 BASIC16.44■□□□□ 0.22
APOEP02649 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
APOEP02649 TM4SF19-201ENST00000273695 1022 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
APOEP02649 TMEM52-201ENST00000310991 929 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
APOEP02649 TSPAN4-201ENST00000346501 882 ntTSL 3 BASIC16.44■□□□□ 0.22
APOEP02649 NUDT1-205ENST00000397048 783 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
APOEP02649 LRP5L-201ENST00000402785 1193 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
APOEP02649 NCBP2-203ENST00000422610 676 ntTSL 2 BASIC16.44■□□□□ 0.22
APOEP02649 LINC01818-201ENST00000437118 368 ntTSL 2 BASIC16.44■□□□□ 0.22
APOEP02649 ZMYND10-AS1-201ENST00000440013 250 ntTSL 3 BASIC16.44■□□□□ 0.22
APOEP02649 AL160313.1-201ENST00000502101 1039 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
APOEP02649 BANK1-207ENST00000508653 2115 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
APOEP02649 NDUFAF2-203ENST00000511107 586 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
APOEP02649 AC138466.1-201ENST00000535242 391 ntTSL 3 BASIC16.44■□□□□ 0.22
APOEP02649 AC008481.3-201ENST00000585656 727 ntAPPRIS P1 TSL 5 BASIC16.44■□□□□ 0.22
APOEP02649 TK2-203ENST00000451102 3738 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
APOEP02649 MGEA5-203ENST00000370094 3314 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
APOEP02649 CHMP1A-201ENST00000397901 2483 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
APOEP02649 ZNF7-207ENST00000528372 2905 ntAPPRIS P3 TSL 1 (best) BASIC16.44■□□□□ 0.22
APOEP02649 SNHG22-201ENST00000589499 1615 ntTSL 2 BASIC16.44■□□□□ 0.22
APOEP02649 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
APOEP02649 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
APOEP02649 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
APOEP02649 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
APOEP02649 PHLDA1-203ENST00000619060 5913 ntAPPRIS P2 TSL 1 (best) BASIC16.44■□□□□ 0.22
APOEP02649 UGT8-201ENST00000310836 4084 ntAPPRIS P1 TSL 1 (best) BASIC16.44■□□□□ 0.22
APOEP02649 ZNF302-207ENST00000505365 2955 ntTSL 2 BASIC16.44■□□□□ 0.22
APOEP02649 SLC12A5-209ENST00000616201 2955 ntTSL 5 BASIC16.44■□□□□ 0.22
APOEP02649 PRPS2-203ENST00000398491 1348 ntAPPRIS ALT1 TSL 1 (best) BASIC16.44■□□□□ 0.22
APOEP02649 LINC01301-205ENST00000531654 1347 ntTSL 5 BASIC16.44■□□□□ 0.22
APOEP02649 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC16.44■□□□□ 0.22
APOEP02649 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC16.43■□□□□ 0.22
APOEP02649 AL158154.2-201ENST00000585776 2208 ntTSL 2 BASIC16.43■□□□□ 0.22
APOEP02649 AC013268.4-201ENST00000637413 2228 ntBASIC16.43■□□□□ 0.22
APOEP02649 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
APOEP02649 ATE1-209ENST00000543447 4826 ntTSL 2 BASIC16.43■□□□□ 0.22
APOEP02649 SPON1-201ENST00000576479 4837 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
APOEP02649 C15orf61-201ENST00000342683 4253 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
APOEP02649 LSMEM2-201ENST00000316436 1494 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
APOEP02649 LAT-202ENST00000360872 1459 ntAPPRIS P3 TSL 2 BASIC16.43■□□□□ 0.22
APOEP02649 HGNC:18790-211ENST00000621129 1483 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
APOEP02649 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC16.43■□□□□ 0.22
APOEP02649 MIR137HG-202ENST00000424528 2639 ntTSL 2 BASIC16.43■□□□□ 0.22
APOEP02649 FAM215B-201ENST00000458392 2183 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
APOEP02649 SSFA2-205ENST00000431877 5150 ntAPPRIS ALT2 TSL 1 (best) BASIC16.43■□□□□ 0.22
APOEP02649 PDGFB-201ENST00000331163 3497 ntAPPRIS P1 TSL 1 (best) BASIC16.43■□□□□ 0.22
APOEP02649 MIR661-201ENST00000384842 89 ntBASIC16.43■□□□□ 0.22
APOEP02649 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
APOEP02649 RAC2-202ENST00000401529 569 ntTSL 4 BASIC16.43■□□□□ 0.22
APOEP02649 FAM221A-202ENST00000409192 888 ntTSL 1 (best) BASIC16.43■□□□□ 0.22
APOEP02649 RASL12-203ENST00000434605 982 ntTSL 2 BASIC16.43■□□□□ 0.22
APOEP02649 LINC00229-201ENST00000443783 500 ntTSL 2 BASIC16.43■□□□□ 0.22
APOEP02649 TMPRSS11CP-201ENST00000453277 683 ntBASIC16.43■□□□□ 0.22
APOEP02649 IL32-211ENST00000525643 1272 ntAPPRIS P4 TSL 1 (best) BASIC16.43■□□□□ 0.22
APOEP02649 IL32-213ENST00000528163 950 ntAPPRIS P4 TSL 2 BASIC16.43■□□□□ 0.22
APOEP02649 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC16.43■□□□□ 0.22
APOEP02649 PTHLH-206ENST00000538310 854 ntTSL 5 BASIC16.43■□□□□ 0.22
APOEP02649 IL32-231ENST00000551513 791 ntAPPRIS ALT2 TSL 3 BASIC16.43■□□□□ 0.22
APOEP02649 YTHDF3-AS1-201ENST00000603538 718 ntBASIC16.43■□□□□ 0.22
APOEP02649 MALAT1-213ENST00000618227 593 ntTSL 3 BASIC16.43■□□□□ 0.22
APOEP02649 AC010507.1-202ENST00000633286 381 ntTSL 3 BASIC16.43■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 28.4 ms