Protein–RNA interactions for Protein: P01127

PDGFB, Platelet-derived growth factor subunit B, humanhuman

Predicted RBP Predictions only

Length 241 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDGFBP01127 SERPINF2-203ENST00000450523 1462 ntTSL 2 BASIC15.52■□□□□ 0.08
PDGFBP01127 PRSS36-207ENST00000569305 2723 ntAPPRIS ALT2 TSL 1 (best) BASIC15.52■□□□□ 0.08
PDGFBP01127 RNF19A-201ENST00000341084 4285 ntAPPRIS P1 TSL 5 BASIC15.52■□□□□ 0.08
PDGFBP01127 PTP4A1-201ENST00000370651 5088 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PDGFBP01127 AC105020.1-201ENST00000435356 2205 ntBASIC15.52■□□□□ 0.08
PDGFBP01127 AASDHPPT-201ENST00000278618 2955 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PDGFBP01127 IL34-202ENST00000429149 1779 ntAPPRIS P2 TSL 5 BASIC15.52■□□□□ 0.08
PDGFBP01127 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PDGFBP01127 C19orf25-207ENST00000588871 2128 ntTSL 5 BASIC15.52■□□□□ 0.08
PDGFBP01127 TMEM206-201ENST00000261455 2475 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PDGFBP01127 RAVER2-202ENST00000371072 4362 ntAPPRIS P2 TSL 1 (best) BASIC15.52■□□□□ 0.08
PDGFBP01127 NTF3-202ENST00000423158 1336 ntAPPRIS ALT1 TSL 1 (best) BASIC15.52■□□□□ 0.08
PDGFBP01127 CD99P1-204ENST00000435581 2788 ntTSL 2 BASIC15.52■□□□□ 0.08
PDGFBP01127 MUC1-203ENST00000342482 537 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PDGFBP01127 CXCL12-202ENST00000374426 470 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PDGFBP01127 HNRNPA1P41-201ENST00000397777 928 ntBASIC15.52■□□□□ 0.08
PDGFBP01127 AC099552.2-201ENST00000418523 456 ntTSL 3 BASIC15.52■□□□□ 0.08
PDGFBP01127 HCFC1-AS1-201ENST00000438219 350 ntTSL 3 BASIC15.52■□□□□ 0.08
PDGFBP01127 AL008733.1-201ENST00000440516 469 ntTSL 3 BASIC15.52■□□□□ 0.08
PDGFBP01127 TMEM14B-210ENST00000473276 730 ntTSL 3 BASIC15.52■□□□□ 0.08
PDGFBP01127 NAALADL1-207ENST00000526799 959 ntTSL 5 BASIC15.52■□□□□ 0.08
PDGFBP01127 ORAOV1-209ENST00000538554 1000 ntTSL 2 BASIC15.52■□□□□ 0.08
PDGFBP01127 UPF3AP2-202ENST00000578315 730 ntTSL 5 BASIC15.52■□□□□ 0.08
PDGFBP01127 RPL35-206ENST00000629845 340 ntTSL 5 BASIC15.52■□□□□ 0.08
PDGFBP01127 AKT1S1-207ENST00000391835 3075 ntTSL 1 (best) BASIC15.52■□□□□ 0.08
PDGFBP01127 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC15.52■□□□□ 0.07
PDGFBP01127 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC15.52■□□□□ 0.07
PDGFBP01127 MOV10L1-201ENST00000262794 3960 ntAPPRIS P3 TSL 1 (best) BASIC15.52■□□□□ 0.07
PDGFBP01127 SLC37A2-203ENST00000403796 2910 ntAPPRIS ALT1 TSL 2 BASIC15.52■□□□□ 0.07
PDGFBP01127 TMPRSS9-205ENST00000613480 2568 ntTSL 1 (best) BASIC15.52■□□□□ 0.07
PDGFBP01127 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PDGFBP01127 ZNF619-205ENST00000456778 2192 ntTSL 2 BASIC15.52■□□□□ 0.07
PDGFBP01127 EMILIN3-201ENST00000332312 3796 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PDGFBP01127 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC15.52■□□□□ 0.07
PDGFBP01127 LINC00116-201ENST00000414416 2051 ntAPPRIS P5 TSL 1 (best) BASIC15.52■□□□□ 0.07
PDGFBP01127 TBC1D3J-201ENST00000620719 1426 ntBASIC15.51■□□□□ 0.07
PDGFBP01127 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDGFBP01127 RCHY1-202ENST00000380840 1735 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PDGFBP01127 PPIL3-201ENST00000286175 1370 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PDGFBP01127 LGALS3BP-218ENST00000591778 1961 ntTSL 2 BASIC15.51■□□□□ 0.07
PDGFBP01127 LFNG-207ENST00000614382 1969 ntTSL 5 BASIC15.51■□□□□ 0.07
PDGFBP01127 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDGFBP01127 NINL-201ENST00000278886 4969 ntAPPRIS P3 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDGFBP01127 PKM-216ENST00000565184 2503 ntAPPRIS ALT1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDGFBP01127 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC15.51■□□□□ 0.07
PDGFBP01127 SAE1-202ENST00000392776 1851 ntTSL 3 BASIC15.51■□□□□ 0.07
PDGFBP01127 CCNL2-203ENST00000408952 1857 ntTSL 5 BASIC15.51■□□□□ 0.07
PDGFBP01127 PLAG1-203ENST00000429357 1899 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDGFBP01127 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC15.51■□□□□ 0.07
PDGFBP01127 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDGFBP01127 TMEM214-201ENST00000238788 2990 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDGFBP01127 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDGFBP01127 TPM1-202ENST00000288398 1295 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PDGFBP01127 AC092535.3-201ENST00000504969 468 ntTSL 3 BASIC15.51■□□□□ 0.07
PDGFBP01127 AL160314.3-201ENST00000556041 767 ntBASIC15.51■□□□□ 0.07
PDGFBP01127 MIR4783-201ENST00000580343 82 ntBASIC15.51■□□□□ 0.07
PDGFBP01127 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC15.51■□□□□ 0.07
PDGFBP01127 AC111170.1-201ENST00000591110 1132 ntTSL 3 BASIC15.51■□□□□ 0.07
PDGFBP01127 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC15.51■□□□□ 0.07
PDGFBP01127 AC090164.2-201ENST00000611487 516 ntBASIC15.51■□□□□ 0.07
PDGFBP01127 IFI27-215ENST00000621160 644 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDGFBP01127 ADORA1-202ENST00000337894 2919 ntAPPRIS P1 TSL 2 BASIC15.51■□□□□ 0.07
PDGFBP01127 SERPING1-204ENST00000378324 1751 ntAPPRIS ALT2 TSL 2 BASIC15.51■□□□□ 0.07
PDGFBP01127 MEG3-206ENST00000423456 1771 ntTSL 2 BASIC15.51■□□□□ 0.07
PDGFBP01127 CMTM3-203ENST00000460097 1797 ntTSL 2 BASIC15.51■□□□□ 0.07
PDGFBP01127 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDGFBP01127 CCDC40-202ENST00000374876 2010 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PDGFBP01127 OCLN-202ENST00000396442 1748 ntAPPRIS P1 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDGFBP01127 KCNQ2-202ENST00000344462 2750 ntAPPRIS ALT2 TSL 1 (best) BASIC15.51■□□□□ 0.07
PDGFBP01127 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PDGFBP01127 ARFRP1-213ENST00000619493 2456 ntAPPRIS P1 TSL 3 BASIC15.51■□□□□ 0.07
PDGFBP01127 MFGE8-215ENST00000566497 1689 ntAPPRIS P1 TSL 5 BASIC15.51■□□□□ 0.07
PDGFBP01127 PCM1-206ENST00000518537 2171 ntTSL 1 (best) BASIC15.51■□□□□ 0.07
PDGFBP01127 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC15.51■□□□□ 0.07
PDGFBP01127 GOLGA6L2-201ENST00000312015 1379 ntAPPRIS ALT2 TSL 2 BASIC15.5■□□□□ 0.07
PDGFBP01127 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC15.5■□□□□ 0.07
PDGFBP01127 ATP6AP2-226ENST00000637526 1862 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
PDGFBP01127 HERPUD2-202ENST00000396081 3057 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PDGFBP01127 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC15.5■□□□□ 0.07
PDGFBP01127 PHF20L1-201ENST00000220847 3297 ntTSL 5 BASIC15.5■□□□□ 0.07
PDGFBP01127 PAQR4-202ENST00000318782 2793 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PDGFBP01127 MCCC1-201ENST00000265594 2545 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PDGFBP01127 RIF1-204ENST00000430328 7992 ntAPPRIS ALT2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PDGFBP01127 SQOR-208ENST00000568606 1792 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
PDGFBP01127 SLC39A1-210ENST00000617697 2214 ntAPPRIS P1 TSL 5 BASIC15.5■□□□□ 0.07
PDGFBP01127 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PDGFBP01127 GAD1-201ENST00000344257 1029 ntTSL 5 BASIC15.5■□□□□ 0.07
PDGFBP01127 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC15.5■□□□□ 0.07
PDGFBP01127 CXorf40A-201ENST00000359293 974 ntAPPRIS P3 TSL 2 BASIC15.5■□□□□ 0.07
PDGFBP01127 MRPL55-214ENST00000366741 603 ntAPPRIS P1 TSL 2 BASIC15.5■□□□□ 0.07
PDGFBP01127 MRPL55-218ENST00000366747 603 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PDGFBP01127 TMEM14B-202ENST00000379542 975 ntAPPRIS P1 TSL 1 (best) BASIC15.5■□□□□ 0.07
PDGFBP01127 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC15.5■□□□□ 0.07
PDGFBP01127 CDRT15-201ENST00000420162 766 ntAPPRIS P2 TSL 1 (best) BASIC15.5■□□□□ 0.07
PDGFBP01127 SIAH2-AS1-201ENST00000461943 441 ntTSL 4 BASIC15.5■□□□□ 0.07
PDGFBP01127 PRKRA-211ENST00000487082 1211 ntTSL 1 (best) BASIC15.5■□□□□ 0.07
PDGFBP01127 AC104561.3-201ENST00000518590 715 ntTSL 5 BASIC15.5■□□□□ 0.07
PDGFBP01127 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC15.5■□□□□ 0.07
PDGFBP01127 AC138230.1-201ENST00000525893 664 ntTSL 5 BASIC15.5■□□□□ 0.07
PDGFBP01127 CDIP1-202ENST00000562334 1205 ntTSL 2 BASIC15.5■□□□□ 0.07
Retrieved 100 of 98,524 protein–RNA pairs in 58.7 ms