Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC13.4□□□□□ -0.26
SDCBPO00560 USP28-214ENST00000545540 3431 ntTSL 2 BASIC13.4□□□□□ -0.26
SDCBPO00560 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
SDCBPO00560 SYT9-201ENST00000318881 3955 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SDCBPO00560 LRRC42-201ENST00000319223 1727 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SDCBPO00560 TGM6-201ENST00000202625 2292 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SDCBPO00560 LIM2-201ENST00000221973 983 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
SDCBPO00560 CLTA-201ENST00000242285 1152 ntAPPRIS P4 TSL 1 (best) BASIC13.4□□□□□ -0.26
SDCBPO00560 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC13.4□□□□□ -0.26
SDCBPO00560 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
SDCBPO00560 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC13.4□□□□□ -0.26
SDCBPO00560 MOB1B-202ENST00000396051 1107 ntTSL 2 BASIC13.4□□□□□ -0.26
SDCBPO00560 AL022342.1-201ENST00000400363 863 ntBASIC13.4□□□□□ -0.26
SDCBPO00560 AL671277.1-201ENST00000429656 993 ntBASIC13.4□□□□□ -0.26
SDCBPO00560 FAM58CP-201ENST00000435741 640 ntBASIC13.4□□□□□ -0.26
SDCBPO00560 IL32-206ENST00000440815 920 ntAPPRIS P4 TSL 2 BASIC13.4□□□□□ -0.26
SDCBPO00560 IL32-207ENST00000444393 892 ntAPPRIS P4 TSL 2 BASIC13.4□□□□□ -0.26
SDCBPO00560 PKD2-202ENST00000502363 1222 ntTSL 5 BASIC13.4□□□□□ -0.26
SDCBPO00560 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC13.4□□□□□ -0.26
SDCBPO00560 CTBP1-AS2-204ENST00000514984 533 ntTSL 4 BASIC13.4□□□□□ -0.26
SDCBPO00560 IL32-219ENST00000531965 746 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
SDCBPO00560 IL32-223ENST00000534507 1112 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
SDCBPO00560 IL32-226ENST00000548476 1014 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
SDCBPO00560 IL32-227ENST00000548652 812 ntAPPRIS ALT2 TSL 3 BASIC13.4□□□□□ -0.26
SDCBPO00560 COX5A-206ENST00000568783 571 ntTSL 3 BASIC13.4□□□□□ -0.26
SDCBPO00560 KRT16P2-202ENST00000579062 563 ntTSL 4 BASIC13.4□□□□□ -0.26
SDCBPO00560 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC13.4□□□□□ -0.26
SDCBPO00560 MTX1-207ENST00000609421 1085 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SDCBPO00560 HADH-212ENST00000638621 741 ntTSL 5 BASIC13.4□□□□□ -0.26
SDCBPO00560 SEPT8-205ENST00000378701 1817 ntTSL 2 BASIC13.4□□□□□ -0.26
SDCBPO00560 HGNC:24955-201ENST00000303177 2452 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SDCBPO00560 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC13.4□□□□□ -0.26
SDCBPO00560 PDE3B-202ENST00000455098 3665 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
SDCBPO00560 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC13.4□□□□□ -0.26
SDCBPO00560 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SDCBPO00560 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC13.4□□□□□ -0.26
SDCBPO00560 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SDCBPO00560 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SDCBPO00560 UBQLN1-202ENST00000376395 4118 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
SDCBPO00560 KNSTRN-202ENST00000416151 1899 ntTSL 3 BASIC13.4□□□□□ -0.26
SDCBPO00560 AGT-201ENST00000366667 2291 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SDCBPO00560 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SDCBPO00560 WDR45-201ENST00000322995 1444 ntTSL 5 BASIC13.39□□□□□ -0.27
SDCBPO00560 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
SDCBPO00560 UCKL1-AS1-201ENST00000623569 3602 ntBASIC13.39□□□□□ -0.27
SDCBPO00560 MEGF11-204ENST00000422354 5914 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SDCBPO00560 ZNF18-201ENST00000322748 2767 ntAPPRIS P3 TSL 2 BASIC13.39□□□□□ -0.27
SDCBPO00560 ADAM15-204ENST00000359280 2874 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SDCBPO00560 MAGEA2B-202ENST00000370293 1714 ntAPPRIS P1 TSL 2 BASIC13.39□□□□□ -0.27
SDCBPO00560 MOCS1-205ENST00000373195 2852 ntTSL 2 BASIC13.39□□□□□ -0.27
SDCBPO00560 MAPK7-203ENST00000395602 3059 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SDCBPO00560 CELF4-223ENST00000603232 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SDCBPO00560 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SDCBPO00560 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SDCBPO00560 HCK-209ENST00000538448 2215 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
SDCBPO00560 IRF2BP2-201ENST00000366609 4663 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
SDCBPO00560 MUM1-201ENST00000415183 2837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SDCBPO00560 MED16-203ENST00000325464 2922 ntAPPRIS P2 TSL 5 BASIC13.39□□□□□ -0.27
SDCBPO00560 ZFP30-201ENST00000351218 6090 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SDCBPO00560 SNURF-201ENST00000338327 331 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
SDCBPO00560 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
SDCBPO00560 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC13.39□□□□□ -0.27
SDCBPO00560 AL355306.1-201ENST00000415580 579 ntBASIC13.39□□□□□ -0.27
SDCBPO00560 HOXC-AS3-202ENST00000513165 533 ntTSL 3 BASIC13.39□□□□□ -0.27
SDCBPO00560 FAM86C2P-203ENST00000528684 1004 ntBASIC13.39□□□□□ -0.27
SDCBPO00560 HIST4H4-204ENST00000539745 577 ntAPPRIS P1 BASIC13.39□□□□□ -0.27
SDCBPO00560 AL135744.1-201ENST00000565098 629 ntBASIC13.39□□□□□ -0.27
SDCBPO00560 HNRNPDL-206ENST00000602300 1291 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SDCBPO00560 FHL2-212ENST00000607522 759 ntTSL 2 BASIC13.39□□□□□ -0.27
SDCBPO00560 AC012366.1-201ENST00000615411 473 ntTSL 5 BASIC13.39□□□□□ -0.27
SDCBPO00560 TMEM114-205ENST00000624696 560 ntTSL 2 BASIC13.39□□□□□ -0.27
SDCBPO00560 TEKT4P2-201ENST00000416067 1599 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SDCBPO00560 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SDCBPO00560 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
SDCBPO00560 NOX4-215ENST00000534731 2156 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SDCBPO00560 LINC00528-201ENST00000600723 2160 ntBASIC13.39□□□□□ -0.27
SDCBPO00560 MFSD13A-201ENST00000238936 2852 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
SDCBPO00560 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
SDCBPO00560 PKN1-202ENST00000342216 2960 ntTSL 2 BASIC13.39□□□□□ -0.27
SDCBPO00560 GTF2IRD1-203ENST00000455841 3315 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SDCBPO00560 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
SDCBPO00560 CAMK2D-211ENST00000511664 2210 ntTSL 2 BASIC13.39□□□□□ -0.27
SDCBPO00560 ANK1-201ENST00000265709 6379 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
SDCBPO00560 RAB3IL1-201ENST00000301773 2125 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
SDCBPO00560 SCLT1-205ENST00000503401 1604 ntAPPRIS ALT2 TSL 3 BASIC13.39□□□□□ -0.27
SDCBPO00560 AKAP8P1-201ENST00000434743 1349 ntBASIC13.39□□□□□ -0.27
SDCBPO00560 ARFGAP1-203ENST00000370283 3281 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
SDCBPO00560 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SDCBPO00560 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
SDCBPO00560 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC13.38□□□□□ -0.27
SDCBPO00560 C3-201ENST00000245907 5263 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SDCBPO00560 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SDCBPO00560 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC13.38□□□□□ -0.27
SDCBPO00560 AC104836.1-202ENST00000636805 6041 ntAPPRIS P1 TSL 5 BASIC13.38□□□□□ -0.27
SDCBPO00560 TELO2-201ENST00000262319 3314 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SDCBPO00560 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC13.38□□□□□ -0.27
SDCBPO00560 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC13.38□□□□□ -0.27
SDCBPO00560 KIAA0895-207ENST00000436884 1952 ntTSL 2 BASIC13.38□□□□□ -0.27
SDCBPO00560 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC13.38□□□□□ -0.27
SDCBPO00560 RPH3AL-201ENST00000323434 2809 ntTSL 1 (best) BASIC13.38□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 31 ms