Protein–RNA interactions for Protein: C9J1S8

TRIM49D1, Tripartite motif-containing protein 49D, humanhuman

Predictions only

Length 452 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM49D1C9J1S8 LRRN1-201ENST00000319331 3823 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 OR2I1P-209ENST00000641730 5365 ntBASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 MYLK2-202ENST00000375994 2956 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 ALOX15-202ENST00000570836 2784 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
TRIM49D1C9J1S8 LTBP2-201ENST00000261978 8567 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 WIZ-207ENST00000599910 4609 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 BCAR1-202ENST00000393420 2667 ntTSL 5 BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 DNM1-203ENST00000393594 3245 ntAPPRIS ALT1 TSL 2 BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 USP19-203ENST00000398892 4622 ntAPPRIS ALT2 TSL 5 BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 CA10-201ENST00000285273 2914 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 DNAJC4-203ENST00000355040 759 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 HLA-H-201ENST00000383620 1096 ntBASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 IGHV3OR16-6-201ENST00000568775 360 ntBASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 AP000842.3-202ENST00000569238 1080 ntBASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 AC055811.1-201ENST00000584203 1231 ntTSL 5 BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 GPR42-202ENST00000597214 1182 ntAPPRIS P1 BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 AC091812.2-201ENST00000619081 385 ntBASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 CHL1-202ENST00000397491 5235 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 GOPC-203ENST00000535237 4460 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 CHID1-215ENST00000528581 1431 ntTSL 2 BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 ERG28-201ENST00000256319 2633 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 FXYD6-201ENST00000260282 1929 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 MCM3AP-AS1-203ENST00000421927 2280 ntTSL 2 BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 TP53I11-208ENST00000525680 2647 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 PTK7-210ENST00000471863 2412 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 MAGEA8-205ENST00000542674 2084 ntAPPRIS P1 TSL 3 BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 AKT1S1-205ENST00000391833 3640 ntAPPRIS P1 TSL 2 BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 PODN-202ENST00000371500 3287 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 NR3C1-209ENST00000503201 2594 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 TTC29-208ENST00000513335 2226 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
TRIM49D1C9J1S8 NOS1AP-201ENST00000361897 4931 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 AP4E1-201ENST00000261842 6758 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 CALN1-201ENST00000329008 9243 ntAPPRIS P3 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 TPD52-201ENST00000379096 4041 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 SLC52A3-205ENST00000632431 2694 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 REC8-209ENST00000611366 2331 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 GOSR2-211ENST00000623037 1814 ntTSL 5 BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 UNC13B-203ENST00000396787 5293 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 ZNF575-202ENST00000458714 2285 ntTSL 2 BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 GABARAPL1-218ENST00000546017 2294 ntTSL 2 BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 EMC9-202ENST00000419198 953 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 HNRNPA1P28-201ENST00000424481 961 ntBASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 LINC00237-202ENST00000455890 1220 ntTSL 2 BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 AP006621.3-203ENST00000525941 610 ntTSL 2 BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 ADAM10-217ENST00000561288 583 ntTSL 3 BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 AC114490.1-201ENST00000417456 3163 ntTSL 2 BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 SIX5-204ENST00000622857 1401 ntTSL 5 BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 AL607033.1-201ENST00000623900 1599 ntBASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 UBE3A-227ENST00000638011 8742 ntAPPRIS ALT1 TSL 5 BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 GGT1-201ENST00000248923 2326 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 ALG9-201ENST00000398006 2345 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 SHISA9-201ENST00000423335 4043 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 AC079336.5-201ENST00000581360 2480 ntTSL 2 BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 ELOA-204ENST00000613537 4924 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 FAM228B-210ENST00000615575 1357 ntAPPRIS P3 TSL 5 BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 EEF1A1-202ENST00000316292 4441 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 NDRG2-203ENST00000350792 2127 ntAPPRIS ALT1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 PIP5K1C-202ENST00000537021 3326 ntAPPRIS ALT2 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC15.73■□□□□ 0.11
TRIM49D1C9J1S8 GTF2IRD1-201ENST00000265755 3430 ntAPPRIS P3 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 PHF14-215ENST00000634607 3407 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 SEPT11-206ENST00000505788 2079 ntAPPRIS ALT1 TSL 5 BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 SLC22A15-202ENST00000369503 4720 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 KCNT1-208ENST00000488444 3696 ntAPPRIS ALT2 TSL 5 BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 AC004943.2-201ENST00000563328 4842 ntTSL 3 BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 PSD2-201ENST00000274710 4513 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 LATS2-201ENST00000382592 5511 ntAPPRIS P1 TSL 1 (best) BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 C1R-202ENST00000536053 2347 ntTSL 2 BASIC15.72■□□□□ 0.11
TRIM49D1C9J1S8 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC15.72■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 29.3 ms