Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 ATE1-203ENST00000369043 4900 ntAPPRIS ALT1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 PIGT-246ENST00000639499 2021 ntTSL 5 BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 RAP1GAP2-209ENST00000637138 3175 ntTSL 5 BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 ZBTB45P2-201ENST00000452245 1531 ntBASIC14.38□□□□□ -0.11
CLN6Q9NWW5 C1orf43-204ENST00000368518 1278 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 RAC2-202ENST00000401529 569 ntTSL 4 BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 FAM197Y8-203ENST00000450145 560 ntBASIC14.38□□□□□ -0.11
CLN6Q9NWW5 AF186996.4-201ENST00000467186 377 ntBASIC14.38□□□□□ -0.11
CLN6Q9NWW5 AC109635.5-201ENST00000533593 962 ntBASIC14.38□□□□□ -0.11
CLN6Q9NWW5 BRICD5-202ENST00000562360 783 ntTSL 2 BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 MIR4751-201ENST00000578027 74 ntBASIC14.38□□□□□ -0.11
CLN6Q9NWW5 FHL2-212ENST00000607522 759 ntTSL 2 BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 AC117500.6-201ENST00000624871 588 ntBASIC14.38□□□□□ -0.11
CLN6Q9NWW5 AC104581.1-203ENST00000640240 353 ntTSL 2 BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 CENPO-202ENST00000380834 4386 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 CNKSR2-203ENST00000425654 5668 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 CXorf40B-205ENST00000462691 1440 ntAPPRIS ALT1 TSL 3 BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 MAMSTR-201ENST00000318083 1837 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 TRAF3-202ENST00000351691 2239 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 SETD3-201ENST00000329331 1330 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 TMEM132E-203ENST00000631683 4379 ntAPPRIS P2 TSL 5 BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 SLC22A5-203ENST00000435065 1746 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 CRYBG2-210ENST00000527815 2523 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 NAA60-229ENST00000575076 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 ABHD11-201ENST00000222800 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 PLEKHD1-201ENST00000322564 4865 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 MAPKAPK5-207ENST00000551404 1630 ntAPPRIS P4 TSL 5 BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 ARHGEF26-AS1-204ENST00000491862 2598 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 AFDN-203ENST00000366806 5962 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 DUSP13-203ENST00000372702 1778 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 VGLL4-211ENST00000430365 1377 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 E2F6-212ENST00000546212 3191 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 DMTN-203ENST00000381470 2601 ntTSL 5 BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 ADCY7-203ENST00000537579 2090 ntTSL 5 BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 HNF1B-201ENST00000613727 1546 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 WDR45-234ENST00000634838 1545 ntTSL 5 BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 AL139398.1-201ENST00000638795 1529 ntTSL 5 BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 CSDC2-201ENST00000306149 2777 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 UGT3A1-204ENST00000507113 1650 ntTSL 2 BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 ITGBL1-207ENST00000622834 2369 ntTSL 5 BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 CHEK2-204ENST00000382580 1971 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 TBC1D24-207ENST00000627285 4382 ntAPPRIS P3 TSL 5 BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 RNASEH2A-201ENST00000221486 1165 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 METTL26-201ENST00000301686 794 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 HIST1H3D-201ENST00000356476 411 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 GUK1-203ENST00000366718 1275 ntAPPRIS P3 TSL 3 BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 RPUSD3-201ENST00000383820 1225 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 AP1S3-203ENST00000396654 830 ntAPPRIS P2 TSL 2 BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 METTL26-205ENST00000397666 726 ntTSL 2 BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 R3HDM2P2-201ENST00000401880 2116 ntBASIC14.37□□□□□ -0.11
CLN6Q9NWW5 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 AC062015.1-201ENST00000423838 1134 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 KRT18P67-201ENST00000432816 1264 ntBASIC14.37□□□□□ -0.11
CLN6Q9NWW5 REEP2-206ENST00000506158 1021 ntTSL 2 BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 IL32-212ENST00000526464 1198 ntAPPRIS P4 TSL 2 BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 IL32-217ENST00000530538 674 ntAPPRIS P4 TSL 3 BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 FLYWCH2-203ENST00000572006 754 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 AC012615.5-201ENST00000592720 581 ntTSL 4 BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 MAP2K3-215ENST00000627447 351 ntTSL 5 BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 AC092811.2-201ENST00000632561 559 ntTSL 4 BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 HNF4G-201ENST00000354370 1728 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 NFIC-203ENST00000443272 1716 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 KLF11-205ENST00000535335 4033 ntAPPRIS ALT2 TSL 2 BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 THSD4-202ENST00000355327 9200 ntAPPRIS P1 TSL 5 BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 E2F6-211ENST00000542100 3450 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 NUDT16-202ENST00000521288 6108 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 TUBB3-201ENST00000315491 1769 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 UBE2G2-202ENST00000345496 3566 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
CLN6Q9NWW5 HTR3E-202ENST00000415389 2139 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLN6Q9NWW5 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC14.36□□□□□ -0.11
CLN6Q9NWW5 ZNF664-202ENST00000392404 4262 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLN6Q9NWW5 CD300LG-204ENST00000539718 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLN6Q9NWW5 TUSC3-201ENST00000382020 3683 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLN6Q9NWW5 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CLN6Q9NWW5 TMEM92-201ENST00000300433 2767 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLN6Q9NWW5 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLN6Q9NWW5 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC14.36□□□□□ -0.11
CLN6Q9NWW5 HOXB5-201ENST00000239151 2041 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLN6Q9NWW5 RAPH1-202ENST00000319170 9808 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLN6Q9NWW5 PRSS8-201ENST00000317508 1872 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
CLN6Q9NWW5 DPY19L2P2-201ENST00000312132 4078 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
CLN6Q9NWW5 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 28.7 ms