Protein–RNA interactions for Protein: Q9BYB0

SHANK3, SH3 and multiple ankyrin repeat domains protein 3, humanhuman

Predictions only

Length 1,731 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK3Q9BYB0 ELAVL1-205ENST00000596459 1473 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 TMSB10-201ENST00000233143 496 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 RDH5-201ENST00000257895 1269 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 UBL4A-201ENST00000369653 711 ntTSL 3 BASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 RPL14-202ENST00000396203 916 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 AC011742.3-201ENST00000439053 820 ntBASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 LINC01848-201ENST00000523446 518 ntTSL 3 BASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 EIF3K-202ENST00000538434 966 ntTSL 2 BASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 RDH5-204ENST00000548082 1259 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 MIR4754-201ENST00000582477 89 ntBASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 PYGL-201ENST00000216392 3048 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 OIT3-202ENST00000622652 1602 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 TOM1L1-221ENST00000575882 2507 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 STAT5A-207ENST00000546010 3086 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 ZNF135-202ENST00000359978 2120 ntTSL 2 BASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 GEM-202ENST00000396194 2103 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 AC090515.2-201ENST00000500929 1396 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 AQP10-203ENST00000484864 2262 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 AD000864.1-201ENST00000624076 2295 ntBASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 HDAC8-209ENST00000373589 1740 ntTSL 2 BASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 GOLGA8M-201ENST00000563027 1899 ntAPPRIS P1 TSL 5 BASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 ACE-203ENST00000413513 2237 ntTSL 2 BASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 SAMD3-202ENST00000368134 2377 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 ZFAND6-207ENST00000558494 1472 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC19.74■□□□□ 0.75
SHANK3Q9BYB0 NAGK-201ENST00000244204 1154 ntAPPRIS P5 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 IFI35-203ENST00000415816 1241 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 AL353637.1-201ENST00000451571 732 ntBASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 TGIF1-218ENST00000551402 1089 ntTSL 2 BASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 NPM1P43-201ENST00000558669 786 ntBASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 GFER-204ENST00000567719 483 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 AL445483.1-201ENST00000568695 736 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 LINC00621-201ENST00000577004 1177 ntTSL 4 BASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 AC127024.2-201ENST00000581019 789 ntTSL 5 BASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 IRF3-215ENST00000596822 823 ntTSL 3 BASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 REXO1L5P-201ENST00000622260 2098 ntBASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 CRELD1-203ENST00000397170 1728 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 PUDP-202ENST00000412827 1376 ntTSL 2 BASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 NFIX-208ENST00000587260 1537 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 AC244394.1-201ENST00000435000 1665 ntBASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 AL138725.1-201ENST00000407347 1314 ntBASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 FKBP4P6-201ENST00000457486 1332 ntBASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 DNASE1L2-204ENST00000567494 1301 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 ACAP1-201ENST00000158762 2512 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 SERPINE3-201ENST00000400389 1218 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 KRT18P36-201ENST00000411618 1276 ntBASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 FGFR3P1-201ENST00000449999 601 ntBASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 IGHV1OR21-1-201ENST00000622028 353 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 ELN-221ENST00000445912 2583 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 DRC3-216ENST00000584166 1953 ntTSL 5 BASIC19.73■□□□□ 0.75
SHANK3Q9BYB0 RABL6-203ENST00000371663 3078 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SHANK3Q9BYB0 LRRC59-201ENST00000225972 2910 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SHANK3Q9BYB0 PCDHB6-202ENST00000622991 2608 ntTSL 2 BASIC19.72■□□□□ 0.75
SHANK3Q9BYB0 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
SHANK3Q9BYB0 PHGDH-223ENST00000641597 2585 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
SHANK3Q9BYB0 RABL6-201ENST00000311502 3091 ntAPPRIS P3 TSL 1 (best) BASIC19.72■□□□□ 0.75
SHANK3Q9BYB0 PTPN20-206ENST00000395722 1995 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SHANK3Q9BYB0 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SHANK3Q9BYB0 ZNF213-201ENST00000396878 3313 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SHANK3Q9BYB0 YTHDF3-215ENST00000621957 2387 ntAPPRIS ALT1 TSL 5 BASIC19.72■□□□□ 0.75
SHANK3Q9BYB0 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SHANK3Q9BYB0 AC245369.1-201ENST00000390634 434 ntAPPRIS P1 BASIC19.72■□□□□ 0.75
SHANK3Q9BYB0 KAZN-204ENST00000400797 1295 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SHANK3Q9BYB0 IDI2-AS1-201ENST00000420381 672 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SHANK3Q9BYB0 MYO16-AS1-201ENST00000439299 580 ntTSL 5 BASIC19.72■□□□□ 0.75
SHANK3Q9BYB0 LINC00322-201ENST00000450205 699 ntTSL 3 BASIC19.72■□□□□ 0.75
SHANK3Q9BYB0 CARHSP1-203ENST00000561530 729 ntAPPRIS P1 TSL 3 BASIC19.72■□□□□ 0.75
SHANK3Q9BYB0 AC005962.1-201ENST00000584100 773 ntBASIC19.72■□□□□ 0.75
SHANK3Q9BYB0 MAP3K14-AS1-210ENST00000592422 831 ntTSL 3 BASIC19.72■□□□□ 0.75
SHANK3Q9BYB0 AC005901.1-201ENST00000592766 552 ntTSL 4 BASIC19.72■□□□□ 0.75
SHANK3Q9BYB0 DYRK1B-208ENST00000601972 772 ntTSL 2 BASIC19.72■□□□□ 0.75
SHANK3Q9BYB0 AL136301.1-201ENST00000615830 422 ntBASIC19.72■□□□□ 0.75
SHANK3Q9BYB0 PRDM5-202ENST00000394435 2492 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SHANK3Q9BYB0 FAM90A7P-201ENST00000382628 1395 ntBASIC19.72■□□□□ 0.75
SHANK3Q9BYB0 FAM90A23P-201ENST00000400136 1395 ntBASIC19.72■□□□□ 0.75
SHANK3Q9BYB0 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC19.72■□□□□ 0.75
SHANK3Q9BYB0 CYMP-AS1-201ENST00000457402 2351 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
SHANK3Q9BYB0 ANKRD29-208ENST00000592179 3361 ntAPPRIS P1 TSL 1 (best) BASIC19.72■□□□□ 0.75
SHANK3Q9BYB0 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 RARA-206ENST00000425707 3041 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 FST-201ENST00000256759 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 SLC10A3-202ENST00000369649 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 RAB40AL-201ENST00000218249 1029 ntAPPRIS P1 BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 THAP4-202ENST00000402136 785 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 CMC1-204ENST00000423894 549 ntTSL 2 BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 AL589986.1-201ENST00000429230 789 ntTSL 5 BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 KLF2P1-201ENST00000447438 1042 ntBASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 PRSS30P-205ENST00000506153 699 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
SHANK3Q9BYB0 HNRNPA1P36-201ENST00000521313 955 ntBASIC19.71■□□□□ 0.75
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms