Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 AKIP1-202ENST00000309357 1232 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 LCE1E-202ENST00000368771 575 ntAPPRIS P2 TSL 3 BASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 PGGT1BP2-201ENST00000398621 1028 ntBASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 MASP2-202ENST00000400898 726 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 ROPN1-202ENST00000405845 1007 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 PFN2-205ENST00000461868 613 ntTSL 2 BASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 STARD4-205ENST00000505803 803 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 STARD4-207ENST00000509887 1186 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 ATF7-204ENST00000548118 774 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 SPIB-201ENST00000270632 1443 ntTSL 1 (best) BASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 SULT2B1-202ENST00000323090 1447 ntAPPRIS ALT2 TSL 1 (best) BASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 PROZ-202ENST00000375547 1488 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 CASK-203ENST00000378163 4411 ntAPPRIS ALT1 TSL 5 BASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 ACP2-205ENST00000527256 1499 ntTSL 2 BASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 AC148477.4-201ENST00000613430 1793 ntBASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 RUNX2-204ENST00000371438 5698 ntAPPRIS P4 TSL 5 BASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 CNPPD1-201ENST00000360507 2060 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 DOC2GP-204ENST00000639052 2548 ntBASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 AEBP1-206ENST00000450684 2571 ntTSL 2 BASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 PIAS3-201ENST00000369298 2761 ntTSL 5 BASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 REPS1-201ENST00000258062 3161 ntAPPRIS P3 TSL 1 (best) BASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 RUNX2-202ENST00000371432 5487 ntAPPRIS ALT2 TSL 5 BASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 DAG1-201ENST00000308775 5522 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 GDF7-201ENST00000272224 9749 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 ACAD9-201ENST00000308982 2454 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 RGR-202ENST00000359452 2247 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 SMPD4-202ENST00000409031 4896 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 GABBR1-205ENST00000377034 4527 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 ADGRA1-202ENST00000392607 4283 ntAPPRIS P2 TSL 5 BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 CHST10-203ENST00000409701 1338 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 CYTL1-201ENST00000307746 1003 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 TRMT112-201ENST00000308774 561 ntAPPRIS ALT1 TSL 2 BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 UBE2T-201ENST00000367274 922 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 AL583835.2-202ENST00000421363 1104 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 CNN2P8-201ENST00000421872 913 ntBASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 FAM197Y7-201ENST00000432892 766 ntBASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 RFPL4A-201ENST00000434937 1035 ntAPPRIS P1 TSL 5 BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 AC004522.2-201ENST00000456499 680 ntTSL 3 BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 GLYCTK-203ENST00000461183 889 ntTSL 3 BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 AC090099.4-201ENST00000527671 1027 ntTSL 5 BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 AC091891.1-201ENST00000560688 688 ntTSL 3 BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 IGF2-205ENST00000416167 5585 ntAPPRIS P2 TSL 1 (best) BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 TRAPPC11-201ENST00000334690 4552 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 ISLR-201ENST00000249842 2371 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 NEDD1-213ENST00000557644 2367 ntTSL 1 (best) BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 EPN2-201ENST00000314728 4871 ntAPPRIS P4 TSL 1 (best) BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 OPN5-204ENST00000489301 1931 ntAPPRIS ALT2 TSL 5 BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 TBL2-201ENST00000305632 3161 ntAPPRIS P1 TSL 1 (best) BASIC16.57■□□□□ 0.24
PAAF1Q9BRP4 HERPUD1-201ENST00000300302 1862 ntAPPRIS ALT1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 RNF167-211ENST00000575111 1757 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 ELFN1-202ENST00000561626 3742 ntAPPRIS P1 TSL 2 BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 ACSL1-202ENST00000454703 3636 ntTSL 5 BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 ATP2B1-AS1-201ENST00000605386 3632 ntBASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 NLE1-202ENST00000442241 2588 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 DUSP4-201ENST00000240100 5537 ntAPPRIS P1 TSL 1 (best) BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 PRG2-202ENST00000525955 1367 ntAPPRIS P3 TSL 2 BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 SGCZ-201ENST00000382080 2234 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 KRT8P35-201ENST00000483942 1338 ntBASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 PPP1CB-202ENST00000358506 4771 ntAPPRIS P1 TSL 5 BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 UPK3A-201ENST00000216211 1051 ntAPPRIS P3 TSL 1 (best) BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 C2orf27AP3-201ENST00000434123 579 ntBASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 CR589904.1-201ENST00000437830 732 ntTSL 5 BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 AC128709.1-201ENST00000445908 600 ntTSL 3 BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 GUSBP2-202ENST00000479900 1203 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 RNA5SP412-201ENST00000516234 123 ntBASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 OSGIN2-203ENST00000520659 801 ntTSL 2 BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC16.56■□□□□ 0.24
PAAF1Q9BRP4 PACS1-203ENST00000524815 628 ntTSL 4 BASIC16.56■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 47.6 ms