Protein–RNA interactions for Protein: Q8WW32

HMGB4, High mobility group protein B4, humanhuman

Predictions only

Length 186 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB4Q8WW32 AP000347.2-202ENST00000421064 3041 ntTSL 1 (best) BASIC15.68■□□□□ 0.1
HMGB4Q8WW32 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 CTSD-213ENST00000637915 1982 ntAPPRIS ALT2 TSL 5 BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 SLC12A5-201ENST00000243964 6061 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 SLC9A7-201ENST00000328306 3838 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 CEP104-202ENST00000378230 6424 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 MUTYH-211ENST00000456914 1692 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 MELTF-201ENST00000296350 3963 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 TBC1D2-202ENST00000375063 2100 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 AGGF1P2-201ENST00000426656 2106 ntBASIC15.67■□□□□ 0.1
HMGB4Q8WW32 ARHGEF28-201ENST00000296794 5246 ntTSL 5 BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 STYXL1-203ENST00000359697 1374 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 CLDND1-215ENST00000507874 1380 ntTSL 3 BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 MAP4-202ENST00000360240 5142 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 ALOX12-201ENST00000251535 2358 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 SLC2A10-201ENST00000359271 4389 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 DYNC1I1-203ENST00000413338 958 ntTSL 2 BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 DUX4L45-201ENST00000566406 1057 ntBASIC15.67■□□□□ 0.1
HMGB4Q8WW32 AC025279.2-201ENST00000569730 653 ntBASIC15.67■□□□□ 0.1
HMGB4Q8WW32 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 AC015910.1-201ENST00000579400 975 ntBASIC15.67■□□□□ 0.1
HMGB4Q8WW32 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 TNNT1-212ENST00000588981 1163 ntAPPRIS P3 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 SPATA21-206ENST00000612240 603 ntTSL 5 BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 HTT-AS1_1.1-201ENST00000612914 230 ntBASIC15.67■□□□□ 0.1
HMGB4Q8WW32 AC097634.3-201ENST00000613067 820 ntTSL 3 BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 AC244517.4-201ENST00000624549 580 ntTSL 4 BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 RBPMS2-202ENST00000560606 1746 ntTSL 2 BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 PAPD5-202ENST00000436909 4635 ntAPPRIS P1 TSL 2 BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 CEP76-202ENST00000423709 2197 ntTSL 2 BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 COG5-203ENST00000393603 5418 ntAPPRIS ALT2 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 JKAMP-202ENST00000356057 2524 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 SLC19A2-202ENST00000367804 2976 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 CHN1-205ENST00000409900 2447 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 LINC00200-201ENST00000425630 2434 ntTSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 DAP-201ENST00000230895 2339 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 KIFC2-201ENST00000301332 3646 ntAPPRIS P1 TSL 1 (best) BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 KSR1-216ENST00000582410 2392 ntTSL 2 BASIC15.67■□□□□ 0.1
HMGB4Q8WW32 CICP6-201ENST00000457191 2729 ntBASIC15.67■□□□□ 0.1
HMGB4Q8WW32 GTF2A1L-203ENST00000430487 1575 ntTSL 2 BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 SLC29A2-202ENST00000357440 2514 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 SLC29A2-205ENST00000544554 2505 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 EIF4G1-204ENST00000352767 5484 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 CD209-207ENST00000593660 1497 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 RMND1-205ENST00000622845 1484 ntTSL 5 BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 PHF20L1-220ENST00000622263 3375 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 GLOD4-202ENST00000301329 2059 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 ADAMTS13-206ENST00000371929 4934 ntAPPRIS P4 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 NEDD4-202ENST00000435532 5869 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 AP1M1-211ENST00000590756 1705 ntTSL 5 BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 ZNF79-204ENST00000617266 1969 ntTSL 3 BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 AC046158.3-201ENST00000624947 2558 ntBASIC15.66■□□□□ 0.1
HMGB4Q8WW32 NDRG1-202ENST00000414097 3755 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 BAIAP2-219ENST00000575245 2229 ntTSL 5 BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 ASAH1-254ENST00000637636 2218 ntAPPRIS ALT1 TSL 5 BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 PIKFYVE-204ENST00000407449 1898 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 HMGXB3-202ENST00000503427 5275 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 RAB41-201ENST00000276066 1071 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 C9orf16-201ENST00000372994 713 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 TREML1-201ENST00000373127 1194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 RAB41-202ENST00000374473 1074 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 PLA2G5-201ENST00000375108 1161 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 GTF2A2-204ENST00000396063 970 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 AC092614.1-201ENST00000419640 909 ntTSL 3 BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 CNN2P8-201ENST00000421872 913 ntBASIC15.66■□□□□ 0.1
HMGB4Q8WW32 FAM197Y7-201ENST00000432892 766 ntBASIC15.66■□□□□ 0.1
HMGB4Q8WW32 C12orf49-204ENST00000548356 923 ntTSL 2 BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 AP002360.2-202ENST00000572035 738 ntTSL 3 BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 AC129510.1-201ENST00000579979 555 ntTSL 3 BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 PLA2G4C-AS1-201ENST00000596552 568 ntTSL 3 BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 LINC00623-205ENST00000621058 767 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 AC138951.2-201ENST00000623455 1161 ntBASIC15.66■□□□□ 0.1
HMGB4Q8WW32 ZC2HC1C-202ENST00000439583 1509 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 PDE1C-201ENST00000321453 2898 ntAPPRIS ALT1 TSL 2 BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 MYLK3-202ENST00000536476 1795 ntAPPRIS ALT2 TSL 2 BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 RNF31-201ENST00000324103 3627 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 SCAP-201ENST00000265565 4394 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 PPP2CA-203ENST00000481195 4649 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 CHI3L2-212ENST00000524472 1435 ntTSL 2 BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 TPRX1-201ENST00000322175 1924 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 EPB41-205ENST00000373797 2402 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 ZDHHC13-202ENST00000446113 2445 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
HMGB4Q8WW32 CCDC110-209ENST00000510617 2592 ntAPPRIS ALT2 TSL 5 BASIC15.66■□□□□ 0.1
Retrieved 100 of 98,524 protein–RNA pairs in 46.2 ms