Protein–RNA interactions for Protein: Q86TS7

LINC00643, Putative UPF0730 protein encoded by LINC00643, humanhuman

Predictions only

Length 51 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643Q86TS7 ADCY7-201ENST00000254235 6138 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 DUS2-201ENST00000358896 1933 ntAPPRIS P1 TSL 2 BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 NQO2-205ENST00000380455 10084 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 DCAF11-204ENST00000446197 4299 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 NUP98-204ENST00000397004 3923 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 PCDHGA12-201ENST00000252085 4747 ntAPPRIS P3 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 HPSE-206ENST00000512196 1571 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 HRC-201ENST00000252825 2385 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 CCNG1-202ENST00000393929 2366 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 TDRKH-202ENST00000368823 2751 ntAPPRIS ALT1 TSL 2 BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 OSBPL2-201ENST00000313733 4009 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 CREBZF-204ENST00000527447 4037 ntAPPRIS P1 BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 POU2F2-204ENST00000526816 3218 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 ZNF846-201ENST00000397902 2016 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 TUBB4B-201ENST00000340384 1637 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 INTS5-201ENST00000330574 3285 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 MFSD2B-201ENST00000338315 2850 ntAPPRIS ALT2 TSL 5 BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 CHRNA2-207ENST00000520933 2497 ntAPPRIS ALT2 TSL 5 BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 AC018442.1-201ENST00000421439 2061 ntBASIC9.72□□□□□ -0.85
LINC00643Q86TS7 TMEM120B-204ENST00000449592 7461 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 NT5C3A-213ENST00000610140 1670 ntAPPRIS ALT1 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 TCTN2-202ENST00000426174 2513 ntAPPRIS ALT2 TSL 2 BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 AC011298.1-201ENST00000407635 3398 ntTSL 2 BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 GUCA2A-201ENST00000357001 569 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 GTF3C5-204ENST00000372108 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 HAUS4P1-201ENST00000406739 1145 ntBASIC9.72□□□□□ -0.85
LINC00643Q86TS7 AL021707.1-201ENST00000416406 500 ntTSL 3 BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 FAM229A-204ENST00000432622 699 ntAPPRIS P2 TSL 2 BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 CNN2P6-201ENST00000439038 900 ntBASIC9.72□□□□□ -0.85
LINC00643Q86TS7 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 F2R-202ENST00000505600 442 ntTSL 2 BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 ZNF263-205ENST00000574253 1139 ntTSL 2 BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 CDKN2A-213ENST00000579122 666 ntTSL 3 BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 AC092118.2-201ENST00000613495 667 ntBASIC9.72□□□□□ -0.85
LINC00643Q86TS7 AC009154.2-201ENST00000621177 724 ntBASIC9.72□□□□□ -0.85
LINC00643Q86TS7 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 COPS7B-203ENST00000373608 2563 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 LINC01544-201ENST00000567801 5168 ntTSL 2 BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 PLEKHA2-208ENST00000616927 1748 ntTSL 5 BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 CNGA3-204ENST00000409937 2615 ntAPPRIS ALT2 TSL 2 BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 MME-202ENST00000382989 1319 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 PJA1-203ENST00000374583 2692 ntAPPRIS P4 BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 NCS1-201ENST00000372398 4991 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 AMT-201ENST00000273588 2280 ntAPPRIS P3 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 ITPRIP-201ENST00000278071 6807 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 COTL1-201ENST00000262428 1843 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 DNAJB13-201ENST00000339764 1875 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 SLC2A14-213ENST00000539924 1873 ntAPPRIS ALT2 TSL 2 BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 NFATC2-201ENST00000371564 7525 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 SLC29A4-201ENST00000297195 2839 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 PRR30-202ENST00000432962 1440 ntAPPRIS ALT2 TSL 3 BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 C16orf89-202ENST00000472572 1444 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 KRT8P22-201ENST00000562317 1415 ntBASIC9.72□□□□□ -0.85
LINC00643Q86TS7 NF1-204ENST00000431387 2889 ntTSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 SIX4-201ENST00000216513 6285 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 CACNA1G-226ENST00000513689 6879 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 CACNA1G-228ENST00000514079 6891 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 CACNA1G-231ENST00000515165 6870 ntAPPRIS ALT2 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 AQP5-201ENST00000293599 1450 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 LRRC71-201ENST00000337428 1959 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 SFRP2-201ENST00000274063 2032 ntAPPRIS P1 TSL 1 (best) BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 AC015712.6-201ENST00000431060 5068 ntTSL 2 BASIC9.72□□□□□ -0.85
LINC00643Q86TS7 PHF13-201ENST00000377648 3681 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
LINC00643Q86TS7 MYO16-205ENST00000457511 7436 ntAPPRIS ALT2 TSL 1 (best) BASIC9.71□□□□□ -0.85
LINC00643Q86TS7 FES-203ENST00000394302 2133 ntTSL 5 BASIC9.71□□□□□ -0.85
LINC00643Q86TS7 MAGI1-217ENST00000611645 6398 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
LINC00643Q86TS7 DNAJA4-203ENST00000394855 3245 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
LINC00643Q86TS7 MED25-202ENST00000538643 1623 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
LINC00643Q86TS7 GEM-201ENST00000297596 2208 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
LINC00643Q86TS7 TEAD4-202ENST00000359864 1690 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
LINC00643Q86TS7 KIAA1549-202ENST00000440172 12379 ntAPPRIS P3 TSL 1 (best) BASIC9.71□□□□□ -0.85
LINC00643Q86TS7 SLC4A8-205ENST00000535225 2262 ntTSL 2 BASIC9.71□□□□□ -0.85
LINC00643Q86TS7 EIF4G1-205ENST00000382330 5129 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
LINC00643Q86TS7 AL033529.1-201ENST00000480336 3447 ntAPPRIS P1 TSL 2 BASIC9.71□□□□□ -0.85
LINC00643Q86TS7 RERE-212ENST00000476556 4598 ntTSL 1 (best) BASIC9.71□□□□□ -0.85
LINC00643Q86TS7 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC9.71□□□□□ -0.85
LINC00643Q86TS7 AC004834.1-202ENST00000638785 1737 ntTSL 5 BASIC9.71□□□□□ -0.85
LINC00643Q86TS7 RNF157-202ENST00000319945 2937 ntAPPRIS ALT2 TSL 2 BASIC9.71□□□□□ -0.85
LINC00643Q86TS7 APAF1-202ENST00000357310 7055 ntAPPRIS ALT1 TSL 5 BASIC9.71□□□□□ -0.85
LINC00643Q86TS7 TTC29-205ENST00000504425 1777 ntAPPRIS ALT2 TSL 5 BASIC9.71□□□□□ -0.85
LINC00643Q86TS7 FUCA2-201ENST00000002165 2356 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
LINC00643Q86TS7 SYMPK-201ENST00000245934 4195 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
LINC00643Q86TS7 RNF220-203ENST00000361799 3009 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.85
LINC00643Q86TS7 RNF220-204ENST00000372247 3010 ntAPPRIS P1 TSL 5 BASIC9.71□□□□□ -0.85
LINC00643Q86TS7 KIF3C-202ENST00000405914 3180 ntAPPRIS P1 TSL 5 BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 SERPINH1P1-201ENST00000419794 1249 ntBASIC9.71□□□□□ -0.86
LINC00643Q86TS7 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 EGFR-207ENST00000455089 3844 ntTSL 1 (best) BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 AC009299.2-201ENST00000482477 511 ntBASIC9.71□□□□□ -0.86
LINC00643Q86TS7 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC9.71□□□□□ -0.86
LINC00643Q86TS7 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC9.71□□□□□ -0.86
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms