Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 HIST1H2BD-202ENST00000377777 496 ntAPPRIS P1 BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 RNF212-203ENST00000433731 1074 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 AL160408.2-201ENST00000436039 693 ntTSL 3 BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 AC074386.1-202ENST00000463561 864 ntBASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 NMU-203ENST00000507338 658 ntTSL 3 BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 PDPK2P-202ENST00000562415 1191 ntBASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 SLC25A3P1-206ENST00000569142 925 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 AC005412.3-201ENST00000580309 715 ntBASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 MAGIX-204ENST00000614074 778 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 MED16-214ENST00000617672 554 ntTSL 5 BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 AP001350.2-201ENST00000625104 1094 ntBASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 MBD1-205ENST00000353909 2820 ntTSL 1 (best) BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 CAPN5-202ENST00000456580 2805 ntTSL 2 BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 NFIA-205ENST00000371189 1989 ntTSL 2 BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 ZNF84-215ENST00000543758 3501 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 PPP1R16A-201ENST00000292539 2722 ntAPPRIS P1 TSL 2 BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 REM2-202ENST00000536884 1331 ntTSL 2 BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 U82695.1-201ENST00000635752 1889 ntBASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 AC012569.1-201ENST00000591191 1524 ntBASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 MED20-201ENST00000265350 2438 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 CMTM6-201ENST00000205636 3863 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 AC010424.3-201ENST00000635510 1745 ntTSL 5 BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 ANK1-202ENST00000289734 8297 ntAPPRIS ALT2 TSL 1 (best) BASIC15.12■□□□□ 0.01
PPP4R4Q6NUP7 ARHGEF7-204ENST00000375736 5032 ntAPPRIS P3 TSL 1 (best) BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 C4orf19-201ENST00000284437 1949 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 SCAI-202ENST00000373549 1968 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 GRB7-203ENST00000394209 1955 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 XPO6-201ENST00000304658 4422 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 CCNL1-202ENST00000295926 2388 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 PRMT9-201ENST00000322396 3528 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 SPPL2B-207ENST00000610743 2583 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 TSPAN11-201ENST00000261177 5505 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 PCDHA3-202ENST00000532566 4594 ntBASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 SCRN1-203ENST00000409570 535 ntTSL 4 BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 HNRNPA1P28-201ENST00000424481 961 ntBASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 PRR29-203ENST00000425164 1266 ntTSL 2 BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 AC004832.2-201ENST00000426397 482 ntBASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 ZNF295-AS1-202ENST00000429739 783 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 FAM58CP-201ENST00000435741 640 ntBASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 DHDH-204ENST00000523250 634 ntTSL 5 BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 AC013565.3-202ENST00000570120 460 ntTSL 2 BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 OVCA2-201ENST00000572195 1122 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 TMEM220-AS1-206ENST00000583343 876 ntTSL 3 BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 PTPRS-204ENST00000587303 6353 ntAPPRIS ALT2 TSL 1 (best) BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 PGPEP1-209ENST00000604499 769 ntTSL 5 BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 AC068137.2-201ENST00000605408 478 ntBASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 BSG-214ENST00000614867 960 ntTSL 3 BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 HOTTIP_1.1-201ENST00000620415 57 ntBASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 RGS3-206ENST00000374136 2092 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 ACOX3-203ENST00000503233 2253 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 HOXA-AS2-202ENST00000517635 2455 ntTSL 2 BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 ALDH1B1-201ENST00000377698 3066 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 NUP93-201ENST00000308159 2741 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 PPM1A-203ENST00000395076 8184 ntAPPRIS P1 TSL 1 (best) BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 DBH-AS1-201ENST00000425189 2139 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 AC093525.2-201ENST00000564543 1944 ntAPPRIS P1 TSL 2 BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 IL11RA-202ENST00000441545 1700 ntAPPRIS P1 TSL 5 BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 FADS1-216ENST00000542506 1725 ntTSL 2 BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 PHTF1-202ENST00000369598 3000 ntTSL 5 BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 SLC4A8-204ENST00000514353 3041 ntTSL 1 (best) BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 MROH4P-201ENST00000431302 1578 ntBASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC15.11■□□□□ 0.01
PPP4R4Q6NUP7 KIAA1683-209ENST00000612316 2684 ntAPPRIS ALT2 TSL 5 BASIC15.1■□□□□ 0.01
PPP4R4Q6NUP7 TRIM25-201ENST00000316881 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PPP4R4Q6NUP7 SPIRE1-201ENST00000309836 1877 ntTSL 2 BASIC15.1■□□□□ 0.01
PPP4R4Q6NUP7 FLOT2-201ENST00000394906 2756 ntTSL 5 BASIC15.1■□□□□ 0.01
PPP4R4Q6NUP7 PHLDB2-204ENST00000431670 6127 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PPP4R4Q6NUP7 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PPP4R4Q6NUP7 COLQ-206ENST00000603808 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PPP4R4Q6NUP7 DMTN-201ENST00000265800 2554 ntTSL 5 BASIC15.1■□□□□ 0.01
PPP4R4Q6NUP7 DMTN-207ENST00000517305 2551 ntTSL 5 BASIC15.1■□□□□ 0.01
PPP4R4Q6NUP7 TRIP10-208ENST00000596758 1920 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PPP4R4Q6NUP7 AL353732.1-201ENST00000569618 1459 ntBASIC15.1■□□□□ 0.01
PPP4R4Q6NUP7 CCHCR1-201ENST00000376266 2625 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
PPP4R4Q6NUP7 OR2I1P-209ENST00000641730 5365 ntBASIC15.1■□□□□ 0.01
PPP4R4Q6NUP7 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC15.1■□□□□ 0.01
PPP4R4Q6NUP7 ABTB2-201ENST00000435224 4902 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PPP4R4Q6NUP7 KRT20-201ENST00000167588 1737 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PPP4R4Q6NUP7 CEP126-201ENST00000263468 7039 ntAPPRIS P2 TSL 1 (best) BASIC15.1■□□□□ 0.01
PPP4R4Q6NUP7 PTBP1-203ENST00000356948 3598 ntAPPRIS ALT1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PPP4R4Q6NUP7 TNNT1-201ENST00000291901 967 ntAPPRIS ALT2 TSL 1 (best) BASIC15.1■□□□□ 0.01
PPP4R4Q6NUP7 ATP23-201ENST00000300145 1245 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PPP4R4Q6NUP7 C22orf39-201ENST00000333059 1221 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PPP4R4Q6NUP7 STK40-202ENST00000373129 3846 ntAPPRIS P3 TSL 1 (best) BASIC15.1■□□□□ 0.01
PPP4R4Q6NUP7 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC15.1■□□□□ 0.01
PPP4R4Q6NUP7 AMACR-204ENST00000382085 1195 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
PPP4R4Q6NUP7 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC15.1■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 61 ms