Protein–RNA interactions for Protein: Q2M3G4

SHROOM1, Protein Shroom1, humanhuman

Predicted RBP Predictions only

Length 852 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM1Q2M3G4 PCDHGA11-202ENST00000518882 2263 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 FAM227A-201ENST00000355830 2417 ntAPPRIS P5 TSL 5 BASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 TM9SF1-201ENST00000261789 2452 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 PLPPR5-202ENST00000370188 4139 ntAPPRIS ALT1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 POR-218ENST00000461988 2522 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 UBE2D1-204ENST00000615793 2621 ntTSL 2 BASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 RNF217-211ENST00000560949 5145 ntAPPRIS ALT2 TSL 5 BASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 RELT-201ENST00000064780 3535 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 SH3BGR-201ENST00000333634 1251 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 AL355483.2-201ENST00000421637 675 ntTSL 3 BASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 LRRC74B-201ENST00000442047 1179 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 XXYLT1-AS1-201ENST00000458531 431 ntTSL 3 BASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 PFN2-205ENST00000461868 613 ntTSL 2 BASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 LCN10-206ENST00000527229 615 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 C12orf57-206ENST00000544681 980 ntTSL 2 BASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 EMC4-209ENST00000559421 497 ntTSL 2 BASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 AC020907.1-201ENST00000616460 1350 ntBASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 FOS-202ENST00000535987 1402 ntTSL 2 BASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 ZMYM3-202ENST00000373978 1511 ntTSL 5 BASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 NUP153-202ENST00000537253 6030 ntAPPRIS ALT2 TSL 2 BASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 CDKN1A-203ENST00000405375 2267 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 SLC25A22-201ENST00000320230 2796 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 GPR176-205ENST00000561100 2816 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 ARL8B-201ENST00000256496 3005 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 HYMAI-201ENST00000635591 3347 ntBASIC18.11■□□□□ 0.49
SHROOM1Q2M3G4 FBXO18-201ENST00000362091 3560 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 POMT1-208ENST00000423007 3320 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 RBPJL-201ENST00000343694 2489 ntAPPRIS P3 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 SMPDL3A-201ENST00000368440 1851 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 TAPBP-233ENST00000426633 1888 ntAPPRIS P4 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 TC2N-206ENST00000556018 1770 ntTSL 2 BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 KATNA1-201ENST00000335643 1564 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 AC084364.1-201ENST00000551967 1556 ntBASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 LZTS3-202ENST00000337576 4238 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 TEX29-201ENST00000283547 709 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 GUK1-206ENST00000366723 845 ntTSL 5 BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 C1QTNF6-203ENST00000434784 975 ntTSL 3 BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 BX322559.1-201ENST00000456613 319 ntTSL 3 BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 AC084859.1-201ENST00000533002 670 ntTSL 4 BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 AL031600.1-201ENST00000563610 570 ntTSL 4 BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 TSR1-204ENST00000576112 1290 ntTSL 5 BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 MIR3615-201ENST00000581999 87 ntBASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 AC243960.2-201ENST00000600996 747 ntBASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 ZNF347-208ENST00000601804 496 ntTSL 4 BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 APP-204ENST00000357903 3543 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 OPRD1-201ENST00000234961 9345 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 DAG1-222ENST00000545947 5829 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 CPAMD8-203ENST00000443236 5992 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
SHROOM1Q2M3G4 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 AC020916.1-201ENST00000587762 1774 ntBASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 TNIP1-217ENST00000523200 1743 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 TCP11-206ENST00000412155 1690 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 AL353608.3-201ENST00000603200 2211 ntTSL 5 BASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 AC099850.1-201ENST00000451775 1338 ntTSL 2 BASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 RECQL4-210ENST00000621189 3896 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 PFDN5-202ENST00000334478 586 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 MUC1-202ENST00000338684 1107 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 APOC3-202ENST00000375345 604 ntTSL 5 BASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 DHDDS-206ENST00000427245 868 ntTSL 5 BASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 FDPS-203ENST00000447866 1256 ntAPPRIS ALT1 TSL 5 BASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 MACROD2-AS1-202ENST00000455291 663 ntTSL 2 BASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 LINC01248-201ENST00000458264 468 ntTSL 3 BASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 MUC1-218ENST00000471283 635 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 RPARP-AS1-201ENST00000473970 1297 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 KRT18P25-201ENST00000508931 1278 ntBASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 CLRN2-201ENST00000511148 823 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 IL32-222ENST00000533097 814 ntAPPRIS P4 TSL 2 BASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 DERL2-202ENST00000570848 657 ntTSL 5 BASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 STXBP2-221ENST00000602355 716 ntTSL 2 BASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 IL32-201ENST00000008180 1056 ntAPPRIS ALT2 TSL 2 BASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 NFE2L3-201ENST00000056233 3686 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 PCDHA1-201ENST00000378133 2726 ntBASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 ZMYND12-201ENST00000372565 1775 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 SEC14L4-201ENST00000255858 2499 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
SHROOM1Q2M3G4 AL391005.1-201ENST00000623953 2435 ntBASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 114.2 ms