Protein–RNA interactions for Protein: P48380

RFX3, Transcription factor RFX3, humanhuman

Predictions only

Length 749 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RFX3P48380 SPDEF-202ENST00000544425 1866 ntAPPRIS ALT1 TSL 2 BASIC14.82□□□□□ -0.04
RFX3P48380 DBET-201ENST00000630918 3363 ntBASIC14.82□□□□□ -0.04
RFX3P48380 RRP1-207ENST00000497547 3022 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RFX3P48380 EIF2S2-201ENST00000374980 2656 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RFX3P48380 ZBTB11-AS1-201ENST00000609682 2743 ntBASIC14.82□□□□□ -0.04
RFX3P48380 RTEL1-201ENST00000318100 4676 ntTSL 2 BASIC14.82□□□□□ -0.04
RFX3P48380 REXO1L1P-202ENST00000608646 1974 ntBASIC14.82□□□□□ -0.04
RFX3P48380 MTA1-203ENST00000406191 2770 ntAPPRIS P5 TSL 2 BASIC14.82□□□□□ -0.04
RFX3P48380 USP25-201ENST00000285679 3973 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RFX3P48380 SETD1A-201ENST00000262519 6451 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RFX3P48380 ARHGAP11B-210ENST00000622744 2042 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RFX3P48380 LMNB1-201ENST00000261366 2878 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RFX3P48380 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RFX3P48380 DBNDD1-202ENST00000304733 2081 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
RFX3P48380 MARCH2-208ENST00000602117 1667 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RFX3P48380 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC14.82□□□□□ -0.04
RFX3P48380 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC14.82□□□□□ -0.04
RFX3P48380 APC2-201ENST00000233607 10151 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RFX3P48380 PAGE5-201ENST00000289619 741 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
RFX3P48380 ZUFSP-201ENST00000368573 1225 ntTSL 5 BASIC14.82□□□□□ -0.04
RFX3P48380 IL32-205ENST00000396890 1067 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
RFX3P48380 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RFX3P48380 PSMA8-203ENST00000415576 1280 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
RFX3P48380 METTL21AP1-201ENST00000438852 635 ntBASIC14.82□□□□□ -0.04
RFX3P48380 MCF2L-AS1-201ENST00000446789 712 ntTSL 3 BASIC14.82□□□□□ -0.04
RFX3P48380 IL32-233ENST00000552664 731 ntAPPRIS P4 TSL 3 BASIC14.82□□□□□ -0.04
RFX3P48380 AC020558.1-201ENST00000583662 425 ntTSL 3 BASIC14.82□□□□□ -0.04
RFX3P48380 MOB3A-209ENST00000592280 1071 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RFX3P48380 AP001059.3-201ENST00000619053 235 ntBASIC14.82□□□□□ -0.04
RFX3P48380 AC093028.1-201ENST00000622998 982 ntBASIC14.82□□□□□ -0.04
RFX3P48380 Z92544.3-201ENST00000624747 417 ntBASIC14.82□□□□□ -0.04
RFX3P48380 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RFX3P48380 ALPL-204ENST00000374840 2589 ntAPPRIS P3 TSL 1 (best) BASIC14.82□□□□□ -0.04
RFX3P48380 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RFX3P48380 DHRS4L2-205ENST00000543805 1334 ntTSL 5 BASIC14.82□□□□□ -0.04
RFX3P48380 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RFX3P48380 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
RFX3P48380 RNF183-203ENST00000441031 1366 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RFX3P48380 MROH1-209ENST00000534366 5092 ntAPPRIS ALT2 TSL 1 (best) BASIC14.82□□□□□ -0.04
RFX3P48380 PIK3IP1-203ENST00000441972 2374 ntTSL 2 BASIC14.82□□□□□ -0.04
RFX3P48380 TIA1-206ENST00000445587 1440 ntTSL 5 BASIC14.82□□□□□ -0.04
RFX3P48380 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC14.82□□□□□ -0.04
RFX3P48380 SLC44A3-206ENST00000527077 1943 ntTSL 2 BASIC14.82□□□□□ -0.04
RFX3P48380 KIF3C-201ENST00000264712 5344 ntAPPRIS P1 TSL 1 (best) BASIC14.82□□□□□ -0.04
RFX3P48380 DNAJC7-201ENST00000316603 1468 ntTSL 1 (best) BASIC14.82□□□□□ -0.04
RFX3P48380 ADAD1-201ENST00000296513 1961 ntAPPRIS P1 TSL 2 BASIC14.82□□□□□ -0.04
RFX3P48380 AC092127.1-201ENST00000567093 3455 ntBASIC14.82□□□□□ -0.04
RFX3P48380 CLDN19-202ENST00000372539 1586 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX3P48380 AL136379.1-201ENST00000623471 2642 ntBASIC14.81□□□□□ -0.04
RFX3P48380 PAX6-203ENST00000379109 3182 ntAPPRIS ALT1 TSL 2 BASIC14.81□□□□□ -0.04
RFX3P48380 CAMKK2-202ENST00000337174 5304 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX3P48380 LINC00884-202ENST00000448892 2680 ntTSL 5 BASIC14.81□□□□□ -0.04
RFX3P48380 AC144831.1-201ENST00000573312 2656 ntBASIC14.81□□□□□ -0.04
RFX3P48380 RAB18-207ENST00000535776 4811 ntTSL 2 BASIC14.81□□□□□ -0.04
RFX3P48380 TMEM147-AS1-203ENST00000589137 1627 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
RFX3P48380 PCDH10-203ENST00000618019 4574 ntAPPRIS ALT2 BASIC14.81□□□□□ -0.04
RFX3P48380 AC022532.1-201ENST00000624563 1728 ntBASIC14.81□□□□□ -0.04
RFX3P48380 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX3P48380 TMC4-210ENST00000619895 2373 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX3P48380 SRD5A3-201ENST00000264228 4190 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX3P48380 ENDOV-212ENST00000520284 2500 ntTSL 2 BASIC14.81□□□□□ -0.04
RFX3P48380 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX3P48380 AL139400.1-201ENST00000366220 510 ntBASIC14.81□□□□□ -0.04
RFX3P48380 ID3-201ENST00000374561 1251 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX3P48380 NDUFA3-204ENST00000391764 267 ntTSL 3 BASIC14.81□□□□□ -0.04
RFX3P48380 AC004987.2-201ENST00000395959 1148 ntBASIC14.81□□□□□ -0.04
RFX3P48380 OST4-203ENST00000456793 561 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX3P48380 FAM86HP-203ENST00000511564 521 ntTSL 2 BASIC14.81□□□□□ -0.04
RFX3P48380 RAB30-AS1-202ENST00000526795 567 ntTSL 5 BASIC14.81□□□□□ -0.04
RFX3P48380 AC020978.5-201ENST00000564147 533 ntTSL 4 BASIC14.81□□□□□ -0.04
RFX3P48380 LINC00473-203ENST00000581850 929 ntTSL 3 BASIC14.81□□□□□ -0.04
RFX3P48380 AC129926.1-201ENST00000581944 614 ntTSL 2 BASIC14.81□□□□□ -0.04
RFX3P48380 DM1-AS-201ENST00000586251 483 ntTSL 2 BASIC14.81□□□□□ -0.04
RFX3P48380 BAG4-201ENST00000287322 4453 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX3P48380 AC011477.6-201ENST00000604980 1927 ntBASIC14.81□□□□□ -0.04
RFX3P48380 PCDHGB2-202ENST00000622527 2588 ntAPPRIS P1 BASIC14.81□□□□□ -0.04
RFX3P48380 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC14.81□□□□□ -0.04
RFX3P48380 GADD45B-201ENST00000215631 1373 ntAPPRIS P1 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX3P48380 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX3P48380 MBD1-222ENST00000590208 2913 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX3P48380 AC090286.1-201ENST00000354432 1489 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
RFX3P48380 HACD3-206ENST00000565299 1465 ntTSL 5 BASIC14.81□□□□□ -0.04
RFX3P48380 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX3P48380 SLC2A14-202ENST00000396589 2335 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX3P48380 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC14.81□□□□□ -0.04
RFX3P48380 CXorf40A-209ENST00000441248 2411 ntAPPRIS P3 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX3P48380 RPS9-207ENST00000441429 1600 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
RFX3P48380 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC14.81□□□□□ -0.04
RFX3P48380 RASAL1-207ENST00000548055 2502 ntAPPRIS ALT2 TSL 1 (best) BASIC14.81□□□□□ -0.04
RFX3P48380 MPPED2-202ENST00000448418 5591 ntTSL 1 (best) BASIC14.8□□□□□ -0.04
RFX3P48380 CPSF6-203ENST00000456847 1915 ntTSL 5 BASIC14.8□□□□□ -0.04
RFX3P48380 SALL3-201ENST00000536229 3997 ntTSL 3 BASIC14.8□□□□□ -0.04
RFX3P48380 ATP2A3-204ENST00000397035 4182 ntTSL 5 BASIC14.8□□□□□ -0.04
RFX3P48380 PLTP-205ENST00000477313 2255 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
RFX3P48380 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC14.8□□□□□ -0.04
RFX3P48380 RPS19-201ENST00000221975 500 ntTSL 3 BASIC14.8□□□□□ -0.04
RFX3P48380 ERAS-201ENST00000338270 1266 ntAPPRIS P1 BASIC14.8□□□□□ -0.04
RFX3P48380 BLOC1S2-202ENST00000370372 1249 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
RFX3P48380 FCN1-201ENST00000371806 1286 ntAPPRIS P1 TSL 1 (best) BASIC14.8□□□□□ -0.04
RFX3P48380 RNF183-202ENST00000416588 849 ntAPPRIS P1 TSL 3 BASIC14.8□□□□□ -0.04
Retrieved 100 of 98,524 protein–RNA pairs in 61.5 ms