Protein–RNA interactions for Protein: P28068

HLA-DMB, HLA class II histocompatibility antigen, DM beta chain, humanhuman

Predictions only

Length 263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DMBP28068 ADAMTS2-201ENST00000251582 6754 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
HLA-DMBP28068 GPN1-212ENST00000616939 1832 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.48
HLA-DMBP28068 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
HLA-DMBP28068 ZNF800-201ENST00000265827 4203 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
HLA-DMBP28068 C21orf33-202ENST00000348499 1506 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
HLA-DMBP28068 TCTN1-202ENST00000397655 1879 ntTSL 1 (best) BASIC12.02□□□□□ -0.48
HLA-DMBP28068 AQP1-201ENST00000311813 2913 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
HLA-DMBP28068 FEM1B-201ENST00000306917 7122 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.48
HLA-DMBP28068 RNF25-201ENST00000295704 1914 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DMBP28068 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC12.02□□□□□ -0.49
HLA-DMBP28068 AC106881.1-201ENST00000605849 3329 ntBASIC12.02□□□□□ -0.49
HLA-DMBP28068 SPEG-205ENST00000396698 3379 ntTSL 5 BASIC12.02□□□□□ -0.49
HLA-DMBP28068 HLF-201ENST00000226067 5547 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DMBP28068 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DMBP28068 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DMBP28068 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DMBP28068 RNF151-201ENST00000321392 786 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DMBP28068 PRORY-201ENST00000382764 878 ntAPPRIS P1 TSL 5 BASIC12.02□□□□□ -0.49
HLA-DMBP28068 PTTG1-202ENST00000393964 1070 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DMBP28068 LBH-203ENST00000404397 543 ntTSL 4 BASIC12.02□□□□□ -0.49
HLA-DMBP28068 GGCT-205ENST00000409436 954 ntTSL 3 BASIC12.02□□□□□ -0.49
HLA-DMBP28068 PMS2P2-201ENST00000425039 1128 ntBASIC12.02□□□□□ -0.49
HLA-DMBP28068 ADH5P3-201ENST00000433842 1137 ntBASIC12.02□□□□□ -0.49
HLA-DMBP28068 SPCS2P4-201ENST00000436160 681 ntBASIC12.02□□□□□ -0.49
HLA-DMBP28068 IQCF3-204ENST00000446775 1241 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DMBP28068 SS18L2-202ENST00000447630 1047 ntAPPRIS P1 TSL 2 BASIC12.02□□□□□ -0.49
HLA-DMBP28068 TWIST2-201ENST00000448943 1176 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DMBP28068 AC091729.1-201ENST00000449721 869 ntTSL 3 BASIC12.02□□□□□ -0.49
HLA-DMBP28068 SPDYE11-202ENST00000450699 704 ntBASIC12.02□□□□□ -0.49
HLA-DMBP28068 TIMM8BP1-201ENST00000452384 211 ntBASIC12.02□□□□□ -0.49
HLA-DMBP28068 NECAP2-208ENST00000504551 768 ntTSL 5 BASIC12.02□□□□□ -0.49
HLA-DMBP28068 RAB1B-202ENST00000527397 991 ntTSL 3 BASIC12.02□□□□□ -0.49
HLA-DMBP28068 ASXL1-206ENST00000542461 1068 ntTSL 5 BASIC12.02□□□□□ -0.49
HLA-DMBP28068 AC008127.1-201ENST00000548424 499 ntTSL 5 BASIC12.02□□□□□ -0.49
HLA-DMBP28068 RNF34-208ENST00000555076 593 ntTSL 3 BASIC12.02□□□□□ -0.49
HLA-DMBP28068 AC018558.2-201ENST00000566562 480 ntTSL 3 BASIC12.02□□□□□ -0.49
HLA-DMBP28068 COQ9-214ENST00000567933 882 ntTSL 3 BASIC12.02□□□□□ -0.49
HLA-DMBP28068 RNF151-203ENST00000569714 796 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DMBP28068 SPDYE9P-201ENST00000570642 692 ntBASIC12.02□□□□□ -0.49
HLA-DMBP28068 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC12.02□□□□□ -0.49
HLA-DMBP28068 ZNF773-202ENST00000593916 548 ntTSL 3 BASIC12.02□□□□□ -0.49
HLA-DMBP28068 SLC9A3-AS1-205ENST00000606319 477 ntTSL 3 BASIC12.02□□□□□ -0.49
HLA-DMBP28068 TBX18-206ENST00000606784 1230 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DMBP28068 SPDYE10P-202ENST00000612005 668 ntBASIC12.02□□□□□ -0.49
HLA-DMBP28068 SPDYE8P-202ENST00000612377 668 ntBASIC12.02□□□□□ -0.49
HLA-DMBP28068 AL355974.2-201ENST00000614099 556 ntTSL 4 BASIC12.02□□□□□ -0.49
HLA-DMBP28068 AL355974.2-202ENST00000617298 936 ntTSL 3 BASIC12.02□□□□□ -0.49
HLA-DMBP28068 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC12.02□□□□□ -0.49
HLA-DMBP28068 AC007686.3-201ENST00000619017 3487 ntBASIC12.02□□□□□ -0.49
HLA-DMBP28068 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DMBP28068 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DMBP28068 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DMBP28068 PAAF1-205ENST00000535604 1695 ntTSL 5 BASIC12.02□□□□□ -0.49
HLA-DMBP28068 TRPM2-208ENST00000621064 1669 ntTSL 5 BASIC12.02□□□□□ -0.49
HLA-DMBP28068 HYAL2-201ENST00000357750 2055 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DMBP28068 ETV2-204ENST00000403402 1335 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DMBP28068 KRT18P28-201ENST00000453838 1332 ntBASIC12.02□□□□□ -0.49
HLA-DMBP28068 APP-208ENST00000439274 2517 ntTSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DMBP28068 HNRNPUL1-220ENST00000602130 2932 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DMBP28068 AC018716.2-201ENST00000528390 2597 ntTSL 2 BASIC12.02□□□□□ -0.49
HLA-DMBP28068 MBD1-203ENST00000339998 2956 ntAPPRIS ALT2 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DMBP28068 GOLM1-203ENST00000388712 3046 ntAPPRIS P2 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DMBP28068 DIXDC1-201ENST00000440460 5897 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DMBP28068 SELENOF-208ENST00000616787 1835 ntAPPRIS ALT1 TSL 5 BASIC12.02□□□□□ -0.49
HLA-DMBP28068 FAM8A1-201ENST00000259963 4677 ntAPPRIS P1 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DMBP28068 PTOV1-219ENST00000601638 1413 ntTSL 5 BASIC12.02□□□□□ -0.49
HLA-DMBP28068 SNX14-215ENST00000513865 2259 ntTSL 5 BASIC12.02□□□□□ -0.49
HLA-DMBP28068 TBCD-202ENST00000539345 3975 ntTSL 5 BASIC12.02□□□□□ -0.49
HLA-DMBP28068 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC12.02□□□□□ -0.49
HLA-DMBP28068 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC12.01□□□□□ -0.49
HLA-DMBP28068 EIF4G1-216ENST00000427845 5038 ntTSL 5 BASIC12.01□□□□□ -0.49
HLA-DMBP28068 CERNA1-202ENST00000560518 1972 ntTSL 2 BASIC12.01□□□□□ -0.49
HLA-DMBP28068 SIN3B-202ENST00000379803 5129 ntAPPRIS P3 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DMBP28068 RCOR3-203ENST00000419091 2041 ntAPPRIS P1 TSL 2 BASIC12.01□□□□□ -0.49
HLA-DMBP28068 SLC25A27-201ENST00000371347 2963 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DMBP28068 C18orf25-206ENST00000619301 5264 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DMBP28068 CCAR2-201ENST00000308511 4853 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DMBP28068 RCN2-203ENST00000394885 6347 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DMBP28068 ORMDL3-204ENST00000579695 2106 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DMBP28068 NACC2-201ENST00000277554 6899 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DMBP28068 STAU2-219ENST00000522509 2173 ntTSL 2 BASIC12.01□□□□□ -0.49
HLA-DMBP28068 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DMBP28068 ANKRD50-202ENST00000515641 4212 ntTSL 2 BASIC12.01□□□□□ -0.49
HLA-DMBP28068 MAP7-207ENST00000616617 4326 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
HLA-DMBP28068 HSD17B8-203ENST00000374662 990 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DMBP28068 CRLF2-202ENST00000381567 1013 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DMBP28068 LINC00029-202ENST00000414668 1117 ntTSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DMBP28068 LINC00899-202ENST00000444890 493 ntTSL 3 BASIC12.01□□□□□ -0.49
HLA-DMBP28068 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC12.01□□□□□ -0.49
HLA-DMBP28068 LINC01485-205ENST00000523617 586 ntTSL 2 BASIC12.01□□□□□ -0.49
HLA-DMBP28068 NDUFS7-216ENST00000546283 1060 ntTSL 2 BASIC12.01□□□□□ -0.49
HLA-DMBP28068 AC069503.2-201ENST00000546333 576 ntAPPRIS P1 TSL 5 BASIC12.01□□□□□ -0.49
HLA-DMBP28068 AP000275.2-202ENST00000553001 929 ntTSL 5 BASIC12.01□□□□□ -0.49
HLA-DMBP28068 AP000842.3-202ENST00000569238 1080 ntBASIC12.01□□□□□ -0.49
HLA-DMBP28068 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DMBP28068 PFN1-203ENST00000574872 1173 ntTSL 2 BASIC12.01□□□□□ -0.49
HLA-DMBP28068 NID1-201ENST00000264187 5864 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DMBP28068 EFNB1-201ENST00000204961 3314 ntAPPRIS P1 TSL 1 (best) BASIC12.01□□□□□ -0.49
HLA-DMBP28068 NAXD-202ENST00000424185 2311 ntTSL 2 BASIC12.01□□□□□ -0.49
HLA-DMBP28068 DIP2A-201ENST00000400274 7023 ntAPPRIS ALT2 TSL 5 BASIC12.01□□□□□ -0.49
Retrieved 100 of 98,524 protein–RNA pairs in 34.2 ms