Protein–RNA interactions for Protein: P20908

COL5A1, Collagen alpha-1(V) chain, humanhuman

Predicted RBP Predictions only

Length 1,838 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL5A1P20908 LINC00942-201ENST00000515614 2417 ntTSL 5 BASIC14.73□□□□□ -0.05
COL5A1P20908 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL5A1P20908 ICAM2-201ENST00000412356 1334 ntAPPRIS P1 TSL 5 BASIC14.73□□□□□ -0.05
COL5A1P20908 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL5A1P20908 STX3-201ENST00000337979 3299 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL5A1P20908 COX4I1-201ENST00000253452 708 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL5A1P20908 TMEM40-201ENST00000264728 984 ntAPPRIS P3 TSL 2 BASIC14.73□□□□□ -0.05
COL5A1P20908 FAM151A-201ENST00000302250 2005 ntAPPRIS P2 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL5A1P20908 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL5A1P20908 SF3B5-201ENST00000367569 693 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
COL5A1P20908 KRTAP20-4-201ENST00000382828 224 ntAPPRIS P1 BASIC14.73□□□□□ -0.05
COL5A1P20908 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC14.73□□□□□ -0.05
COL5A1P20908 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC14.73□□□□□ -0.05
COL5A1P20908 SUPT4H1P2-201ENST00000501248 353 ntBASIC14.73□□□□□ -0.05
COL5A1P20908 AL355310.3-201ENST00000526411 582 ntTSL 3 BASIC14.73□□□□□ -0.05
COL5A1P20908 FANCA-204ENST00000534992 1088 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL5A1P20908 AC084364.1-201ENST00000551967 1556 ntBASIC14.73□□□□□ -0.05
COL5A1P20908 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC14.73□□□□□ -0.05
COL5A1P20908 C15orf40-211ENST00000565712 559 ntTSL 3 BASIC14.73□□□□□ -0.05
COL5A1P20908 RN7SL774P-201ENST00000577467 290 ntBASIC14.73□□□□□ -0.05
COL5A1P20908 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC14.73□□□□□ -0.05
COL5A1P20908 AC079336.7-201ENST00000623428 1078 ntBASIC14.73□□□□□ -0.05
COL5A1P20908 CU633904.3-201ENST00000624042 1029 ntBASIC14.73□□□□□ -0.05
COL5A1P20908 LINC01672-205ENST00000635092 633 ntTSL 5 BASIC14.73□□□□□ -0.05
COL5A1P20908 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL5A1P20908 COQ8A-202ENST00000366778 2743 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL5A1P20908 KLC4-202ENST00000347162 2404 ntAPPRIS ALT2 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL5A1P20908 DHX40-202ENST00000425628 2255 ntTSL 2 BASIC14.73□□□□□ -0.05
COL5A1P20908 CCDC136-212ENST00000487361 2268 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
COL5A1P20908 TTC34-201ENST00000401095 8814 ntAPPRIS ALT2 TSL 5 BASIC14.73□□□□□ -0.05
COL5A1P20908 DFNA5-202ENST00000409775 1689 ntAPPRIS P1 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL5A1P20908 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC14.73□□□□□ -0.05
COL5A1P20908 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC14.73□□□□□ -0.05
COL5A1P20908 TUBGCP2-202ENST00000368562 2685 ntTSL 2 BASIC14.72□□□□□ -0.05
COL5A1P20908 CPXM1-201ENST00000380605 2391 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL5A1P20908 ZNF574-202ENST00000359044 2940 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL5A1P20908 SCPEP1-201ENST00000262288 1942 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL5A1P20908 FAM214B-203ENST00000378561 5771 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL5A1P20908 RSPO1-203ENST00000612451 2463 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL5A1P20908 LINC01529-205ENST00000637365 2000 ntTSL 5 BASIC14.72□□□□□ -0.05
COL5A1P20908 SUPT20HL2-201ENST00000486479 2409 ntBASIC14.72□□□□□ -0.05
COL5A1P20908 FOXP1-218ENST00000498215 2400 ntAPPRIS P3 TSL 2 BASIC14.72□□□□□ -0.05
COL5A1P20908 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL5A1P20908 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC14.72□□□□□ -0.05
COL5A1P20908 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL5A1P20908 PIGQ-201ENST00000026218 2846 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL5A1P20908 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL5A1P20908 LRRN4-201ENST00000378858 2692 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL5A1P20908 GPAT2-201ENST00000359548 2761 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL5A1P20908 THOC6-201ENST00000253952 1246 ntTSL 2 BASIC14.72□□□□□ -0.05
COL5A1P20908 GAD1-203ENST00000375272 1252 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL5A1P20908 CSNK2B-201ENST00000375865 908 ntAPPRIS P1 TSL 3 BASIC14.72□□□□□ -0.05
COL5A1P20908 FKBP1B-201ENST00000380986 952 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL5A1P20908 CRCP-204ENST00000398684 492 ntTSL 2 BASIC14.72□□□□□ -0.05
COL5A1P20908 GSTK1-202ENST00000409500 888 ntTSL 2 BASIC14.72□□□□□ -0.05
COL5A1P20908 AC018680.1-202ENST00000500324 525 ntTSL 3 BASIC14.72□□□□□ -0.05
COL5A1P20908 FTLP10-202ENST00000505798 471 ntBASIC14.72□□□□□ -0.05
COL5A1P20908 AC134698.3-201ENST00000523880 214 ntBASIC14.72□□□□□ -0.05
COL5A1P20908 AC006063.2-201ENST00000640161 1696 ntTSL 5 BASIC14.72□□□□□ -0.05
COL5A1P20908 SLC34A1-204ENST00000512593 1912 ntTSL 2 BASIC14.72□□□□□ -0.05
COL5A1P20908 GSDMA-203ENST00000635792 1546 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
COL5A1P20908 MFSD11-207ENST00000586622 2952 ntAPPRIS P1 TSL 5 BASIC14.72□□□□□ -0.05
COL5A1P20908 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL5A1P20908 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC14.72□□□□□ -0.05
COL5A1P20908 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC14.72□□□□□ -0.05
COL5A1P20908 SLC6A2-209ENST00000568943 2471 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL5A1P20908 ITPK1-210ENST00000556603 3174 ntAPPRIS P1 TSL 1 (best) BASIC14.72□□□□□ -0.05
COL5A1P20908 KLHL36-204ENST00000564996 2173 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL5A1P20908 CAP2-206ENST00000489374 1430 ntTSL 2 BASIC14.71□□□□□ -0.05
COL5A1P20908 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC14.71□□□□□ -0.05
COL5A1P20908 MAFB-201ENST00000373313 3393 ntAPPRIS P1 BASIC14.71□□□□□ -0.05
COL5A1P20908 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL5A1P20908 ANGPTL8-201ENST00000252453 872 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL5A1P20908 TPRKB-202ENST00000318190 819 ntTSL 5 BASIC14.71□□□□□ -0.05
COL5A1P20908 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL5A1P20908 LINC02158-201ENST00000432377 897 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
COL5A1P20908 AL133466.1-201ENST00000447582 150 ntBASIC14.71□□□□□ -0.05
COL5A1P20908 MPRIPP1-201ENST00000452433 1089 ntBASIC14.71□□□□□ -0.05
COL5A1P20908 AL136088.1-202ENST00000525871 439 ntTSL 2 BASIC14.71□□□□□ -0.05
COL5A1P20908 TPD52L1-208ENST00000528193 789 ntTSL 5 BASIC14.71□□□□□ -0.05
COL5A1P20908 AP006333.2-201ENST00000544948 732 ntTSL 3 BASIC14.71□□□□□ -0.05
COL5A1P20908 MIR3907-201ENST00000579424 151 ntBASIC14.71□□□□□ -0.05
COL5A1P20908 AC008750.3-201ENST00000601148 437 ntTSL 5 BASIC14.71□□□□□ -0.05
COL5A1P20908 AC008763.1-201ENST00000601797 843 ntTSL 3 BASIC14.71□□□□□ -0.05
COL5A1P20908 ZCCHC4-206ENST00000612982 938 ntTSL 5 BASIC14.71□□□□□ -0.05
COL5A1P20908 ANGPTL8-204ENST00000616433 1223 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL5A1P20908 CLEC18A-209ENST00000615430 2215 ntAPPRIS P2 TSL 5 BASIC14.71□□□□□ -0.05
COL5A1P20908 CLEC18C-211ENST00000618957 2215 ntAPPRIS P2 TSL 5 BASIC14.71□□□□□ -0.05
COL5A1P20908 CLEC18B-205ENST00000619275 2215 ntAPPRIS ALT2 TSL 5 BASIC14.71□□□□□ -0.05
COL5A1P20908 SYVN1-202ENST00000307289 2841 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
COL5A1P20908 CTNNBL1-209ENST00000621317 1990 ntAPPRIS ALT1 TSL 5 BASIC14.71□□□□□ -0.05
COL5A1P20908 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC14.71□□□□□ -0.05
COL5A1P20908 PRRT2-214ENST00000637064 2153 ntAPPRIS P1 TSL 5 BASIC14.71□□□□□ -0.05
COL5A1P20908 LTBR-201ENST00000228918 2260 ntAPPRIS P3 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL5A1P20908 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC14.71□□□□□ -0.05
COL5A1P20908 ATG13-216ENST00000530500 2030 ntTSL 2 BASIC14.71□□□□□ -0.05
COL5A1P20908 EIF4A1-201ENST00000293831 1756 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL5A1P20908 RSRP1-202ENST00000431849 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC14.71□□□□□ -0.05
COL5A1P20908 KRT76-201ENST00000332411 2529 ntAPPRIS P1 TSL 1 (best) BASIC14.71□□□□□ -0.06
COL5A1P20908 RPS9-205ENST00000402367 1617 ntTSL 3 BASIC14.71□□□□□ -0.06
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms