Protein–RNA interactions for Protein: P09017

HOXC4, Homeobox protein Hox-C4, humanhuman

Predicted RBP Predictions only

Length 264 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC4P09017 CD300C-201ENST00000330793 1517 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
HOXC4P09017 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HOXC4P09017 TPD52L2-201ENST00000217121 2362 ntTSL 2 BASIC15.17■□□□□ 0.02
HOXC4P09017 CYP2U1-202ENST00000508453 3125 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
HOXC4P09017 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC15.17■□□□□ 0.02
HOXC4P09017 BECN1-213ENST00000590099 2087 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HOXC4P09017 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HOXC4P09017 AL138709.1-201ENST00000614840 1693 ntBASIC15.16■□□□□ 0.02
HOXC4P09017 ZNF18-204ENST00000580306 2330 ntAPPRIS P3 TSL 2 BASIC15.16■□□□□ 0.02
HOXC4P09017 SLC3A2-204ENST00000377891 2222 ntTSL 2 BASIC15.16■□□□□ 0.02
HOXC4P09017 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC15.16■□□□□ 0.02
HOXC4P09017 AC118344.1-201ENST00000378432 1462 ntTSL 2 BASIC15.16■□□□□ 0.02
HOXC4P09017 GDF5-201ENST00000374369 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HOXC4P09017 LENG8-209ENST00000616932 2825 ntAPPRIS ALT2 TSL 5 BASIC15.16■□□□□ 0.02
HOXC4P09017 CLIC6-201ENST00000349499 3806 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
HOXC4P09017 GUK1-206ENST00000366723 845 ntTSL 5 BASIC15.16■□□□□ 0.02
HOXC4P09017 NTMT1-202ENST00000372481 741 ntTSL 2 BASIC15.16■□□□□ 0.02
HOXC4P09017 SPEG-202ENST00000396686 1086 ntTSL 3 BASIC15.16■□□□□ 0.02
HOXC4P09017 CRYAA-202ENST00000398132 826 ntTSL 2 BASIC15.16■□□□□ 0.02
HOXC4P09017 DSCR3-204ENST00000399001 821 ntTSL 2 BASIC15.16■□□□□ 0.02
HOXC4P09017 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC15.16■□□□□ 0.02
HOXC4P09017 SPATA3-204ENST00000433428 856 ntAPPRIS P2 TSL 1 (best) BASIC15.16■□□□□ 0.02
HOXC4P09017 HCST-202ENST00000437550 445 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
HOXC4P09017 AL049698.1-202ENST00000441716 757 ntTSL 5 BASIC15.16■□□□□ 0.02
HOXC4P09017 AC018653.3-202ENST00000538062 735 ntTSL 3 BASIC15.16■□□□□ 0.02
HOXC4P09017 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC15.16■□□□□ 0.02
HOXC4P09017 KRT90P-201ENST00000549264 1064 ntBASIC15.16■□□□□ 0.02
HOXC4P09017 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC15.16■□□□□ 0.02
HOXC4P09017 AC145423.3-201ENST00000615987 467 ntBASIC15.16■□□□□ 0.02
HOXC4P09017 FP236240.1-204ENST00000624932 712 ntTSL 2 BASIC15.16■□□□□ 0.02
HOXC4P09017 RHOXF1P1-202ENST00000635473 501 ntBASIC15.16■□□□□ 0.02
HOXC4P09017 LINC00592-202ENST00000640420 768 ntTSL 5 BASIC15.16■□□□□ 0.02
HOXC4P09017 DLGAP1-220ENST00000581699 2258 ntTSL 2 BASIC15.16■□□□□ 0.02
HOXC4P09017 DOC2GP-204ENST00000639052 2548 ntBASIC15.16■□□□□ 0.02
HOXC4P09017 HAGH-202ENST00000397356 2984 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
HOXC4P09017 PDK1-203ENST00000410055 2990 ntAPPRIS P3 TSL 1 (best) BASIC15.16■□□□□ 0.02
HOXC4P09017 C19orf48-201ENST00000345523 1503 ntAPPRIS P1 TSL 2 BASIC15.16■□□□□ 0.02
HOXC4P09017 FAM230B-201ENST00000415376 1859 ntTSL 2 BASIC15.16■□□□□ 0.02
HOXC4P09017 AC008079.1-201ENST00000434390 1859 ntTSL 5 BASIC15.16■□□□□ 0.02
HOXC4P09017 AP1M2-207ENST00000590923 1757 ntAPPRIS ALT1 TSL 1 (best) BASIC15.16■□□□□ 0.02
HOXC4P09017 NFATC4-222ENST00000555590 2830 ntAPPRIS ALT2 TSL 1 (best) BASIC15.16■□□□□ 0.02
HOXC4P09017 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HOXC4P09017 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC15.15■□□□□ 0.02
HOXC4P09017 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
HOXC4P09017 SHQ1-201ENST00000325599 2879 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HOXC4P09017 ZNF786-202ENST00000491431 2874 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HOXC4P09017 AC092127.1-201ENST00000567093 3455 ntBASIC15.15■□□□□ 0.02
HOXC4P09017 RUNX2-201ENST00000359524 5390 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HOXC4P09017 TCOF1-206ENST00000445265 4825 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
HOXC4P09017 KCNB1-203ENST00000635465 4114 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HOXC4P09017 MCF2L-203ENST00000375604 6445 ntAPPRIS P3 TSL 2 BASIC15.15■□□□□ 0.02
HOXC4P09017 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC15.15■□□□□ 0.02
HOXC4P09017 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC15.15■□□□□ 0.02
HOXC4P09017 NCAPD2-201ENST00000315579 5548 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HOXC4P09017 OR10H1-201ENST00000334920 1124 ntAPPRIS P1 BASIC15.15■□□□□ 0.02
HOXC4P09017 RNU1-114P-201ENST00000365297 166 ntBASIC15.15■□□□□ 0.02
HOXC4P09017 CRYAA-203ENST00000398133 600 ntTSL 3 BASIC15.15■□□□□ 0.02
HOXC4P09017 ZFAND2B-203ENST00000409206 1159 ntTSL 2 BASIC15.15■□□□□ 0.02
HOXC4P09017 LSM5-207ENST00000410044 687 ntTSL 3 BASIC15.15■□□□□ 0.02
HOXC4P09017 AL645941.1-201ENST00000415875 338 ntTSL 3 BASIC15.15■□□□□ 0.02
HOXC4P09017 CD8B2-202ENST00000417670 633 ntBASIC15.15■□□□□ 0.02
HOXC4P09017 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC15.15■□□□□ 0.02
HOXC4P09017 CSF2RBP1-201ENST00000447905 391 ntBASIC15.15■□□□□ 0.02
HOXC4P09017 RNA5SP412-201ENST00000516234 123 ntBASIC15.15■□□□□ 0.02
HOXC4P09017 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC15.15■□□□□ 0.02
HOXC4P09017 LSM1-203ENST00000520755 975 ntTSL 1 (best) BASIC15.15■□□□□ 0.02
HOXC4P09017 PAFAH1B3-202ENST00000538771 1098 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
HOXC4P09017 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC15.15■□□□□ 0.02
HOXC4P09017 ANAPC11-215ENST00000578550 599 ntAPPRIS P1 TSL 2 BASIC15.15■□□□□ 0.02
HOXC4P09017 RN7SL48P-201ENST00000579283 293 ntBASIC15.15■□□□□ 0.02
HOXC4P09017 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC15.15■□□□□ 0.02
HOXC4P09017 FP236240.1-202ENST00000624019 601 ntTSL 3 BASIC15.15■□□□□ 0.02
HOXC4P09017 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC15.15■□□□□ 0.02
HOXC4P09017 SCNN1A-221ENST00000543768 2361 ntAPPRIS ALT2 TSL 2 BASIC15.15■□□□□ 0.02
HOXC4P09017 PLIN3-202ENST00000585479 1535 ntAPPRIS ALT1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HOXC4P09017 CBWD5-204ENST00000377392 2863 ntTSL 2 BASIC15.15■□□□□ 0.02
HOXC4P09017 PAX3-206ENST00000392070 2258 ntAPPRIS P4 TSL 1 (best) BASIC15.15■□□□□ 0.02
HOXC4P09017 TCF7-218ENST00000520958 1408 ntTSL 2 BASIC15.15■□□□□ 0.02
HOXC4P09017 ADGRB2-203ENST00000398538 4675 ntAPPRIS ALT2 TSL 5 BASIC15.15■□□□□ 0.02
HOXC4P09017 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC15.15■□□□□ 0.02
HOXC4P09017 SLC44A1-203ENST00000374724 3088 ntAPPRIS ALT1 TSL 5 BASIC15.15■□□□□ 0.02
HOXC4P09017 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC15.15■□□□□ 0.02
HOXC4P09017 RXRA-202ENST00000481739 1846 ntAPPRIS P1 TSL 1 (best) BASIC15.15■□□□□ 0.02
HOXC4P09017 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC15.15■□□□□ 0.02
HOXC4P09017 ARL4C-202ENST00000390645 4013 ntAPPRIS P1 BASIC15.14■□□□□ 0.01
HOXC4P09017 AL162727.3-201ENST00000635661 2787 ntBASIC15.14■□□□□ 0.01
HOXC4P09017 FBXO21-201ENST00000330622 2906 ntAPPRIS P3 TSL 1 (best) BASIC15.14■□□□□ 0.01
HOXC4P09017 FAM83G-202ENST00000388995 5266 ntAPPRIS P1 TSL 5 BASIC15.14■□□□□ 0.01
HOXC4P09017 GPR161-204ENST00000367838 2676 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HOXC4P09017 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HOXC4P09017 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC15.14■□□□□ 0.01
HOXC4P09017 C21orf33-201ENST00000291577 1674 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HOXC4P09017 AHNAK-201ENST00000257247 1024 ntAPPRIS ALT2 TSL 1 (best) BASIC15.14■□□□□ 0.01
HOXC4P09017 PDE6D-201ENST00000287600 1175 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HOXC4P09017 CARTPT-201ENST00000296777 915 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HOXC4P09017 DYNLRB2-201ENST00000305904 497 ntAPPRIS P1 TSL 1 (best) BASIC15.14■□□□□ 0.01
HOXC4P09017 AC006001.1-201ENST00000325130 474 ntBASIC15.14■□□□□ 0.01
HOXC4P09017 PHACTR1-202ENST00000379329 707 ntTSL 2 BASIC15.14■□□□□ 0.01
HOXC4P09017 NDUFC1-201ENST00000394223 598 ntAPPRIS P1 TSL 3 BASIC15.14■□□□□ 0.01
HOXC4P09017 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC15.14■□□□□ 0.01
Retrieved 100 of 98,524 protein–RNA pairs in 41.1 ms