Protein–RNA interactions for Protein: P07339

CTSD, Cathepsin D, humanhuman

Predicted RBP Predictions only

Length 412 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTSDP07339 ZCCHC17-202ENST00000373714 1730 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CTSDP07339 ZBED1-201ENST00000381218 2832 ntAPPRIS P1 TSL 1 (best) BASIC13.08□□□□□ -0.32
CTSDP07339 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
CTSDP07339 HPCAL1-202ENST00000381765 1904 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
CTSDP07339 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CTSDP07339 COX10-AS1-202ENST00000449363 1944 ntTSL 2 BASIC13.07□□□□□ -0.32
CTSDP07339 ANXA6-215ENST00000523714 2451 ntTSL 2 BASIC13.07□□□□□ -0.32
CTSDP07339 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
CTSDP07339 STK17B-201ENST00000263955 5287 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CTSDP07339 ZBTB7C-213ENST00000588982 4949 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CTSDP07339 HTR3A-202ENST00000355556 2331 ntTSL 2 BASIC13.07□□□□□ -0.32
CTSDP07339 DUS2-207ENST00000565263 2310 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CTSDP07339 TMCO3-202ENST00000434316 3050 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CTSDP07339 SAPCD2-201ENST00000409687 3848 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CTSDP07339 GTPBP8-202ENST00000383677 1787 ntTSL 3 BASIC13.07□□□□□ -0.32
CTSDP07339 AP004608.1-203ENST00000528482 3679 ntTSL 5 BASIC13.07□□□□□ -0.32
CTSDP07339 PITPNM2-AS1-201ENST00000506255 2191 ntTSL 2 BASIC13.07□□□□□ -0.32
CTSDP07339 FAM84A-201ENST00000295092 6355 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CTSDP07339 UBR5-201ENST00000220959 9418 ntAPPRIS ALT1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CTSDP07339 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CTSDP07339 NFATC4-221ENST00000555453 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CTSDP07339 SLC35C2-204ENST00000372230 2246 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CTSDP07339 CICP4-201ENST00000447359 2812 ntBASIC13.07□□□□□ -0.32
CTSDP07339 MYLK3-201ENST00000394809 6911 ntAPPRIS P3 TSL 1 (best) BASIC13.07□□□□□ -0.32
CTSDP07339 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CTSDP07339 SMIM29-201ENST00000335352 1160 ntTSL 2 BASIC13.07□□□□□ -0.32
CTSDP07339 ZNF789-202ENST00000379724 510 ntTSL 2 BASIC13.07□□□□□ -0.32
CTSDP07339 THAP7-202ENST00000399133 1144 ntAPPRIS P1 TSL 2 BASIC13.07□□□□□ -0.32
CTSDP07339 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC13.07□□□□□ -0.32
CTSDP07339 AC140658.5-201ENST00000438532 169 ntBASIC13.07□□□□□ -0.32
CTSDP07339 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC13.07□□□□□ -0.32
CTSDP07339 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC13.07□□□□□ -0.32
CTSDP07339 PLA2G12A-202ENST00000502283 1189 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CTSDP07339 AC098859.1-201ENST00000502915 1238 ntBASIC13.07□□□□□ -0.32
CTSDP07339 KRTAP5-9-201ENST00000528743 1136 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
CTSDP07339 MRPL49-206ENST00000531705 489 ntTSL 5 BASIC13.07□□□□□ -0.32
CTSDP07339 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC13.07□□□□□ -0.32
CTSDP07339 AC012640.2-201ENST00000561606 901 ntBASIC13.07□□□□□ -0.32
CTSDP07339 AC012173.1-201ENST00000567942 430 ntTSL 3 BASIC13.07□□□□□ -0.32
CTSDP07339 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC13.07□□□□□ -0.32
CTSDP07339 TP73-AS1-207ENST00000624167 988 ntBASIC13.07□□□□□ -0.32
CTSDP07339 AC247036.6-201ENST00000632950 410 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
CTSDP07339 KRT8-215ENST00000552150 1687 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CTSDP07339 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CTSDP07339 RAD51D-203ENST00000394589 2287 ntAPPRIS P1 TSL 5 BASIC13.07□□□□□ -0.32
CTSDP07339 EID1-201ENST00000530028 2298 ntAPPRIS P1 BASIC13.07□□□□□ -0.32
CTSDP07339 USP38-202ENST00000510377 4135 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CTSDP07339 GLUL-203ENST00000339526 3942 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CTSDP07339 LETMD1-203ENST00000418425 2123 ntTSL 2 BASIC13.07□□□□□ -0.32
CTSDP07339 PEX11B-201ENST00000369306 1740 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CTSDP07339 FGD5-AS1-202ENST00000424349 3792 ntTSL 1 (best) BASIC13.07□□□□□ -0.32
CTSDP07339 CCDC90B-213ENST00000529611 1986 ntTSL 2 BASIC13.07□□□□□ -0.32
CTSDP07339 C22orf34-201ENST00000343999 2816 ntTSL 2 BASIC13.07□□□□□ -0.32
CTSDP07339 BTBD11-204ENST00000420571 3478 ntTSL 5 BASIC13.07□□□□□ -0.32
CTSDP07339 SHTN1-204ENST00000392903 2400 ntAPPRIS ALT2 TSL 1 (best) BASIC13.07□□□□□ -0.32
CTSDP07339 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC13.07□□□□□ -0.32
CTSDP07339 KLHL33-203ENST00000637228 5404 ntTSL 5 BASIC13.06□□□□□ -0.32
CTSDP07339 PCDH17-201ENST00000377918 8232 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CTSDP07339 ASAH1-221ENST00000636128 1608 ntTSL 5 BASIC13.06□□□□□ -0.32
CTSDP07339 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CTSDP07339 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CTSDP07339 SUPT20H-212ENST00000475892 2836 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CTSDP07339 RLF-201ENST00000372771 6246 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CTSDP07339 RCOR2-201ENST00000301459 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CTSDP07339 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC13.06□□□□□ -0.32
CTSDP07339 NUP98-201ENST00000324932 6973 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CTSDP07339 MBD1-209ENST00000398495 2178 ntTSL 5 BASIC13.06□□□□□ -0.32
CTSDP07339 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CTSDP07339 NIPA1-201ENST00000337435 6567 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
CTSDP07339 RPS2P28-201ENST00000314255 741 ntBASIC13.06□□□□□ -0.32
CTSDP07339 DNASE1L2-202ENST00000382437 1222 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CTSDP07339 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC13.06□□□□□ -0.32
CTSDP07339 SDR39U1-201ENST00000399395 1233 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CTSDP07339 MCFD2-203ENST00000409147 671 ntTSL 2 BASIC13.06□□□□□ -0.32
CTSDP07339 SLC9A3R1-202ENST00000413388 1285 ntTSL 2 BASIC13.06□□□□□ -0.32
CTSDP07339 RPS8P6-201ENST00000426177 609 ntBASIC13.06□□□□□ -0.32
CTSDP07339 VN2R19P-201ENST00000442399 1052 ntBASIC13.06□□□□□ -0.32
CTSDP07339 AL133343.2-201ENST00000457213 370 ntTSL 3 BASIC13.06□□□□□ -0.32
CTSDP07339 PHKG1P2-201ENST00000457537 863 ntBASIC13.06□□□□□ -0.32
CTSDP07339 C1orf109-203ENST00000464085 919 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
CTSDP07339 AC108751.1-201ENST00000490852 363 ntBASIC13.06□□□□□ -0.32
CTSDP07339 CCDC74BP1-201ENST00000508880 1123 ntBASIC13.06□□□□□ -0.32
CTSDP07339 AC133550.1-201ENST00000563565 295 ntTSL 3 BASIC13.06□□□□□ -0.32
CTSDP07339 NAA60-217ENST00000572942 1089 ntTSL 2 BASIC13.06□□□□□ -0.32
CTSDP07339 AL121912.1-201ENST00000603683 238 ntBASIC13.06□□□□□ -0.32
CTSDP07339 AC117500.6-201ENST00000624871 588 ntBASIC13.06□□□□□ -0.32
CTSDP07339 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CTSDP07339 GALNTL6-205ENST00000511251 2905 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CTSDP07339 AK4-202ENST00000395334 6998 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CTSDP07339 TTC39A-208ENST00000413473 2718 ntAPPRIS P4 TSL 1 (best) BASIC13.06□□□□□ -0.32
CTSDP07339 PDZD3-212ENST00000531114 2996 ntTSL 2 BASIC13.06□□□□□ -0.32
CTSDP07339 LSM6-201ENST00000296581 2259 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CTSDP07339 FAM3D-201ENST00000358781 1319 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
CTSDP07339 FER1L4-213ENST00000621044 2778 ntTSL 2 BASIC13.06□□□□□ -0.32
CTSDP07339 FAM60A-203ENST00000454658 1555 ntAPPRIS P1 TSL 2 BASIC13.06□□□□□ -0.32
CTSDP07339 FOXRED1-213ENST00000532125 1825 ntAPPRIS ALT2 TSL 2 BASIC13.06□□□□□ -0.32
CTSDP07339 WASHC2A-202ENST00000314664 4519 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
CTSDP07339 SLC22A12-203ENST00000377572 2887 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CTSDP07339 ALMS1P1-202ENST00000450720 1601 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
CTSDP07339 DENND5B-202ENST00000389082 9470 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 40.6 ms