Protein–RNA interactions for Protein: O75161

NPHP4, Nephrocystin-4, humanhuman

Predicted RBP Predictions only

Length 1,426 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4O75161 CMTM5-201ENST00000339180 1173 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP4O75161 PSMA1-202ENST00000418988 1266 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP4O75161 LINC00441-201ENST00000433480 1143 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP4O75161 AC026410.1-201ENST00000507366 1101 ntBASIC21.49■■□□□ 1.03
NPHP4O75161 DNM1P51-201ENST00000558149 522 ntBASIC21.49■■□□□ 1.03
NPHP4O75161 BX537318.1-201ENST00000608290 1207 ntTSL 5 BASIC21.49■■□□□ 1.03
NPHP4O75161 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP4O75161 AC009093.2-202ENST00000620513 2079 ntBASIC21.49■■□□□ 1.03
NPHP4O75161 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC21.49■■□□□ 1.03
NPHP4O75161 CYP1A1-203ENST00000395049 1594 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP4O75161 RNASE1-202ENST00000397967 1348 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP4O75161 ZNRF2-201ENST00000323037 3460 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP4O75161 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP4O75161 AP001372.2-201ENST00000526036 2493 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP4O75161 ELAC1-201ENST00000269466 2235 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP4O75161 AC106886.4-201ENST00000623557 2502 ntBASIC21.49■■□□□ 1.03
NPHP4O75161 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP4O75161 DPY19L2P4-202ENST00000497063 2018 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP4O75161 SLC29A1-208ENST00000393844 2326 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
NPHP4O75161 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC21.49■■□□□ 1.03
NPHP4O75161 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC21.49■■□□□ 1.03
NPHP4O75161 POLR3E-202ENST00000359210 2469 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP4O75161 AL139010.1-202ENST00000452528 1041 ntTSL 2 BASIC21.48■■□□□ 1.03
NPHP4O75161 SCARNA21-201ENST00000517026 139 ntBASIC21.48■■□□□ 1.03
NPHP4O75161 AC073911.3-201ENST00000624401 631 ntBASIC21.48■■□□□ 1.03
NPHP4O75161 ORAOV1-206ENST00000536870 2274 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP4O75161 AC009802.1-201ENST00000637973 1609 ntTSL 5 BASIC21.48■■□□□ 1.03
NPHP4O75161 SGPP2-201ENST00000321276 3336 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP4O75161 CCNJL-203ENST00000393977 3320 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP4O75161 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.48■■□□□ 1.03
NPHP4O75161 AC244394.1-201ENST00000435000 1665 ntBASIC21.48■■□□□ 1.03
NPHP4O75161 TTC8-216ENST00000614125 2377 ntTSL 5 BASIC21.48■■□□□ 1.03
NPHP4O75161 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC21.48■■□□□ 1.03
NPHP4O75161 OSBP2-211ENST00000446658 2836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP4O75161 MPP3-201ENST00000398389 2182 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP4O75161 EVA1A-202ENST00000393913 1802 ntAPPRIS P2 TSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP4O75161 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC21.48■■□□□ 1.03
NPHP4O75161 OBSL1-201ENST00000289656 2274 ntTSL 5 BASIC21.48■■□□□ 1.03
NPHP4O75161 TMEM184C-204ENST00000508208 1528 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP4O75161 AMT-239ENST00000636865 1914 ntTSL 5 BASIC21.48■■□□□ 1.03
NPHP4O75161 SLC25A20-202ENST00000430379 1576 ntTSL 3 BASIC21.48■■□□□ 1.03
NPHP4O75161 PSMD13-212ENST00000532097 1991 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP4O75161 DDOST-206ENST00000602624 1963 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP4O75161 PPP1R15A-201ENST00000200453 2378 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP4O75161 CMIP-201ENST00000398040 2825 ntTSL 1 (best) BASIC21.48■■□□□ 1.03
NPHP4O75161 LAIR2-201ENST00000301202 699 ntAPPRIS P4 TSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP4O75161 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP4O75161 RPL35-201ENST00000348462 455 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP4O75161 AL020996.1-201ENST00000442055 435 ntTSL 2 BASIC21.47■■□□□ 1.03
NPHP4O75161 NPTN-204ENST00000562924 1094 ntTSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP4O75161 C2orf69P1-201ENST00000563532 1093 ntBASIC21.47■■□□□ 1.03
NPHP4O75161 DCTPP1-202ENST00000565758 749 ntTSL 3 BASIC21.47■■□□□ 1.03
NPHP4O75161 HIST1H2BE-201ENST00000614097 497 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
NPHP4O75161 AC234782.2-201ENST00000614615 1240 ntTSL 2 BASIC21.47■■□□□ 1.03
NPHP4O75161 Z98259.2-201ENST00000641583 609 ntBASIC21.47■■□□□ 1.03
NPHP4O75161 PROB1-201ENST00000434752 5122 ntAPPRIS P1 BASIC21.47■■□□□ 1.03
NPHP4O75161 SAMM50-201ENST00000350028 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP4O75161 SEPT9-237ENST00000591198 2160 ntTSL 2 BASIC21.47■■□□□ 1.03
NPHP4O75161 KRT32-201ENST00000225899 1750 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP4O75161 ZNRF3-201ENST00000402174 2667 ntAPPRIS P3 TSL 2 BASIC21.47■■□□□ 1.03
NPHP4O75161 EXOC7-213ENST00000467929 2260 ntTSL 2 BASIC21.47■■□□□ 1.03
NPHP4O75161 MAGEA9-201ENST00000243314 1814 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP4O75161 ID2-203ENST00000396290 1362 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP4O75161 ALOX12P2-203ENST00000570921 1945 ntBASIC21.47■■□□□ 1.03
NPHP4O75161 ULK1-201ENST00000321867 5310 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP4O75161 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC21.47■■□□□ 1.03
NPHP4O75161 CRLF2-201ENST00000381566 1545 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
NPHP4O75161 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC21.47■■□□□ 1.03
NPHP4O75161 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP4O75161 LRRC14-201ENST00000292524 5328 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP4O75161 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC21.47■■□□□ 1.03
NPHP4O75161 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC21.47■■□□□ 1.03
NPHP4O75161 TTLL8-201ENST00000266182 2505 ntAPPRIS ALT2 TSL 5 BASIC21.46■■□□□ 1.03
NPHP4O75161 GON7-201ENST00000306954 1154 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP4O75161 HBB-201ENST00000335295 628 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP4O75161 RAB25-201ENST00000361084 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP4O75161 AC012441.2-201ENST00000444843 739 ntBASIC21.46■■□□□ 1.03
NPHP4O75161 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC21.46■■□□□ 1.03
NPHP4O75161 SMIM24-203ENST00000587847 820 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP4O75161 AP003392.6-201ENST00000607709 325 ntBASIC21.46■■□□□ 1.03
NPHP4O75161 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC21.46■■□□□ 1.03
NPHP4O75161 TEX264-201ENST00000341333 1340 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP4O75161 GPBAR1-204ENST00000522678 2003 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
NPHP4O75161 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP4O75161 CHTOP-203ENST00000368690 2165 ntAPPRIS ALT1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP4O75161 TRAPPC2L-201ENST00000301021 2215 ntAPPRIS P1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP4O75161 AC006449.6-201ENST00000612330 2296 ntBASIC21.46■■□□□ 1.03
NPHP4O75161 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC21.46■■□□□ 1.03
NPHP4O75161 FXYD5-201ENST00000342879 1580 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP4O75161 ANP32A-203ENST00000465139 2440 ntAPPRIS P2 TSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP4O75161 C12orf66-204ENST00000544871 2441 ntTSL 2 BASIC21.46■■□□□ 1.03
NPHP4O75161 TPGS2-202ENST00000383056 1726 ntAPPRIS ALT2 TSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP4O75161 TVP23C-203ENST00000428082 1911 ntAPPRIS ALT1 TSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP4O75161 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC21.46■■□□□ 1.03
NPHP4O75161 SLC12A8-207ENST00000469902 2989 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
NPHP4O75161 ZNF454-202ENST00000519564 2142 ntAPPRIS P1 TSL 2 BASIC21.46■■□□□ 1.03
NPHP4O75161 CRTC1-201ENST00000321949 2501 ntAPPRIS P3 TSL 1 (best) BASIC21.46■■□□□ 1.03
NPHP4O75161 AC092265.1-201ENST00000422638 498 ntTSL 2 BASIC21.46■■□□□ 1.03
NPHP4O75161 AC026320.2-201ENST00000434379 478 ntBASIC21.46■■□□□ 1.03
NPHP4O75161 LYPLA2P1-203ENST00000447689 696 ntBASIC21.46■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 56.9 ms