Protein–RNA interactions for Protein: H7C350

CCDC188, Coiled-coil domain-containing protein 188, humanhuman

Predictions only

Length 402 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC188H7C350 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC188H7C350 TP53INP2-201ENST00000374809 4018 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
CCDC188H7C350 FAM114A2-215ENST00000522858 3379 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC188H7C350 SLC39A1-204ENST00000368623 2723 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC188H7C350 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC16.34■□□□□ 0.21
CCDC188H7C350 EXOG-201ENST00000287675 2792 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC188H7C350 RTKN-202ENST00000272430 2142 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC188H7C350 LINC00667-206ENST00000582363 2935 ntTSL 2 BASIC16.34■□□□□ 0.21
CCDC188H7C350 SMARCA4-207ENST00000541122 5139 ntAPPRIS P4 TSL 5 BASIC16.34■□□□□ 0.21
CCDC188H7C350 USP19-205ENST00000398898 4474 ntAPPRIS ALT2 TSL 5 BASIC16.34■□□□□ 0.21
CCDC188H7C350 C4A-259ENST00000498271 5269 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC188H7C350 FAM110C-201ENST00000327669 3760 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC188H7C350 B4GALNT1-201ENST00000341156 3036 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC188H7C350 ELF2-202ENST00000379549 3005 ntTSL 2 BASIC16.34■□□□□ 0.21
CCDC188H7C350 TPD52L2-202ENST00000346249 2297 ntAPPRIS ALT1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC188H7C350 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC188H7C350 PUS7-202ENST00000469408 2356 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC188H7C350 KYAT1-202ENST00000320665 1623 ntTSL 2 BASIC16.34■□□□□ 0.21
CCDC188H7C350 SLC11A2-204ENST00000541174 2470 ntAPPRIS P3 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC188H7C350 PRDM6-201ENST00000407847 9267 ntAPPRIS P1 TSL 5 BASIC16.34■□□□□ 0.21
CCDC188H7C350 BRF1-211ENST00000547530 3358 ntAPPRIS P1 TSL 1 (best) BASIC16.34■□□□□ 0.21
CCDC188H7C350 YPEL1-201ENST00000339468 4329 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CCDC188H7C350 UBXN11-205ENST00000374221 1792 ntAPPRIS P4 TSL 2 BASIC16.33■□□□□ 0.21
CCDC188H7C350 NFIC-202ENST00000395111 1755 ntTSL 2 BASIC16.33■□□□□ 0.21
CCDC188H7C350 AC068946.1-202ENST00000318673 2745 ntAPPRIS P1 TSL 2 BASIC16.33■□□□□ 0.21
CCDC188H7C350 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC16.33■□□□□ 0.21
CCDC188H7C350 SF3B4-201ENST00000271628 2085 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CCDC188H7C350 TMEM127-201ENST00000258439 6266 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.21
CCDC188H7C350 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC16.33■□□□□ 0.21
CCDC188H7C350 AL354714.1-201ENST00000356006 2136 ntTSL 1 (best) BASIC16.33■□□□□ 0.21
CCDC188H7C350 PGBD5-201ENST00000391860 10961 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC188H7C350 ADCYAP1-203ENST00000579794 3346 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC188H7C350 PPM1F-203ENST00000407142 5587 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
CCDC188H7C350 LDLR-202ENST00000455727 2333 ntTSL 2 BASIC16.33■□□□□ 0.2
CCDC188H7C350 CYLD-202ENST00000398568 3536 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC188H7C350 E2F3-201ENST00000346618 4749 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC188H7C350 AC123912.2-201ENST00000594927 2409 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC188H7C350 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC16.33■□□□□ 0.2
CCDC188H7C350 CYB5A-203ENST00000397914 619 ntTSL 3 BASIC16.33■□□□□ 0.2
CCDC188H7C350 CRIP1-203ENST00000409393 677 ntAPPRIS P1 TSL 3 BASIC16.33■□□□□ 0.2
CCDC188H7C350 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.33■□□□□ 0.2
CCDC188H7C350 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC16.33■□□□□ 0.2
CCDC188H7C350 BARX1-AS1-202ENST00000454594 307 ntTSL 3 BASIC16.33■□□□□ 0.2
CCDC188H7C350 AL356056.2-201ENST00000506914 669 ntTSL 4 BASIC16.33■□□□□ 0.2
CCDC188H7C350 MAL2-202ENST00000531508 892 ntTSL 3 BASIC16.33■□□□□ 0.2
CCDC188H7C350 AP000721.2-201ENST00000537170 650 ntTSL 4 BASIC16.33■□□□□ 0.2
CCDC188H7C350 AL162171.1-201ENST00000556328 718 ntTSL 3 BASIC16.33■□□□□ 0.2
CCDC188H7C350 METRN-205ENST00000568415 612 ntAPPRIS ALT2 TSL 3 BASIC16.33■□□□□ 0.2
CCDC188H7C350 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC188H7C350 AC027307.2-201ENST00000591252 911 ntBASIC16.33■□□□□ 0.2
CCDC188H7C350 AC026979.3-201ENST00000607315 403 ntBASIC16.33■□□□□ 0.2
CCDC188H7C350 AP003397.1-201ENST00000525706 1387 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC188H7C350 RIPK1-201ENST00000259808 4160 ntAPPRIS P1 TSL 5 BASIC16.33■□□□□ 0.2
CCDC188H7C350 PITPNB-202ENST00000335272 2926 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC188H7C350 FBLIM1-201ENST00000332305 1530 ntTSL 2 BASIC16.33■□□□□ 0.2
CCDC188H7C350 SHC1-204ENST00000368450 3059 ntAPPRIS ALT1 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC188H7C350 SHC1-205ENST00000368453 3062 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC188H7C350 AC084364.1-201ENST00000551967 1556 ntBASIC16.33■□□□□ 0.2
CCDC188H7C350 WSCD1-208ENST00000573634 1573 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC188H7C350 NR2C1-219ENST00000622476 1561 ntTSL 5 BASIC16.33■□□□□ 0.2
CCDC188H7C350 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.33■□□□□ 0.2
CCDC188H7C350 PCCB-218ENST00000490504 1613 ntTSL 3 BASIC16.33■□□□□ 0.2
CCDC188H7C350 MTRF1L-201ENST00000367230 3431 ntTSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC188H7C350 FAM219A-204ENST00000379081 3543 ntTSL 5 BASIC16.33■□□□□ 0.2
CCDC188H7C350 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC16.33■□□□□ 0.2
CCDC188H7C350 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC188H7C350 CEACAM19-202ENST00000403660 1982 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC188H7C350 ZFPM2-206ENST00000520492 3960 ntTSL 2 BASIC16.33■□□□□ 0.2
CCDC188H7C350 ANO10-213ENST00000451430 2019 ntTSL 2 BASIC16.33■□□□□ 0.2
CCDC188H7C350 CCDC116-201ENST00000292779 2260 ntAPPRIS P2 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC188H7C350 IQCE-203ENST00000402050 6844 ntAPPRIS P3 TSL 1 (best) BASIC16.33■□□□□ 0.2
CCDC188H7C350 C1orf159-202ENST00000379320 2324 ntAPPRIS ALT2 TSL 2 BASIC16.33■□□□□ 0.2
CCDC188H7C350 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC16.32■□□□□ 0.2
CCDC188H7C350 PAX8-AS1-204ENST00000436293 2687 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC188H7C350 F2RL1-201ENST00000296677 2914 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC188H7C350 SPOCK3-201ENST00000357154 2986 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
CCDC188H7C350 MIR600HG-201ENST00000449175 5984 ntBASIC16.32■□□□□ 0.2
CCDC188H7C350 DDX49-201ENST00000247003 1830 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC188H7C350 GPD1L-201ENST00000282541 4060 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC188H7C350 ABCB8-201ENST00000297504 2487 ntTSL 2 BASIC16.32■□□□□ 0.2
CCDC188H7C350 TDRD10-201ENST00000368480 1776 ntAPPRIS ALT2 TSL 2 BASIC16.32■□□□□ 0.2
CCDC188H7C350 PRPS1-204ENST00000372435 2073 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC188H7C350 DNAJC22-201ENST00000395069 2059 ntAPPRIS P1 TSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC188H7C350 ITGB2-204ENST00000397846 422 ntTSL 2 BASIC16.32■□□□□ 0.2
CCDC188H7C350 ATP6V1B1-202ENST00000412314 1805 ntTSL 5 BASIC16.32■□□□□ 0.2
CCDC188H7C350 REXO1L2P-201ENST00000425429 2069 ntBASIC16.32■□□□□ 0.2
CCDC188H7C350 UBAC2-AS1-201ENST00000426037 1771 ntTSL 2 BASIC16.32■□□□□ 0.2
CCDC188H7C350 CPA5-202ENST00000431780 1803 ntTSL 2 BASIC16.32■□□□□ 0.2
CCDC188H7C350 RGS9-202ENST00000443584 2078 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC188H7C350 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC16.32■□□□□ 0.2
CCDC188H7C350 TUBA4B-203ENST00000490341 1380 ntAPPRIS P1 TSL 2 BASIC16.32■□□□□ 0.2
CCDC188H7C350 ARSK-202ENST00000504763 1088 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC188H7C350 TMEM5-AS1-201ENST00000546214 563 ntTSL 4 BASIC16.32■□□□□ 0.2
CCDC188H7C350 BLOC1S1-201ENST00000547076 837 ntTSL 2 BASIC16.32■□□□□ 0.2
CCDC188H7C350 AC243965.1-201ENST00000557595 781 ntTSL 3 BASIC16.32■□□□□ 0.2
CCDC188H7C350 AC018845.2-201ENST00000568326 409 ntBASIC16.32■□□□□ 0.2
CCDC188H7C350 ALDOA-225ENST00000569545 1359 ntAPPRIS P2 TSL 5 BASIC16.32■□□□□ 0.2
CCDC188H7C350 CACNA1A-202ENST00000573710 7569 ntAPPRIS ALT2 TSL 5 BASIC16.32■□□□□ 0.2
CCDC188H7C350 SIGLEC7-205ENST00000600577 616 ntTSL 1 (best) BASIC16.32■□□□□ 0.2
CCDC188H7C350 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC16.32■□□□□ 0.2
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms