Protein–RNA interactions for Protein: Q9NWW5

CLN6, Ceroid-lipofuscinosis neuronal protein 6, humanhuman

Predictions only

Length 311 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6Q9NWW5 AFAP1-204ENST00000420658 7768 ntAPPRIS ALT1 TSL 2 BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 RIC1-201ENST00000251879 4127 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 FAM86B2-202ENST00000309608 806 ntTSL 3 BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 KCNAB2-205ENST00000378092 1202 ntAPPRIS ALT1 TSL 5 BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 TREML1-203ENST00000437044 647 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 HNRNPDP1-201ENST00000439535 754 ntBASIC14.4□□□□□ -0.1
CLN6Q9NWW5 AL137026.1-202ENST00000452578 1089 ntTSL 2 BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 AC018712.1-201ENST00000455767 687 ntBASIC14.4□□□□□ -0.1
CLN6Q9NWW5 PCBP4-205ENST00000461554 2147 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 SDHD-206ENST00000528182 754 ntTSL 3 BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 TRMT112-202ENST00000535126 704 ntTSL 2 BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 AC012640.2-201ENST00000561606 901 ntBASIC14.4□□□□□ -0.1
CLN6Q9NWW5 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 LINC00910-203ENST00000587874 544 ntTSL 4 BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 AC022150.1-201ENST00000599222 640 ntTSL 3 BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 PLAUR-214ENST00000601723 1205 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 AL078644.1-201ENST00000609881 752 ntBASIC14.4□□□□□ -0.1
CLN6Q9NWW5 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 ANO2-212ENST00000612575 1087 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 TP73-AS1-207ENST00000624167 988 ntBASIC14.4□□□□□ -0.1
CLN6Q9NWW5 ARHGAP6-204ENST00000380718 3632 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 CNTFR-204ENST00000610543 1926 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 SAFB-202ENST00000454510 2650 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 SKOR1-201ENST00000341418 3332 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 C15orf59-204ENST00000569673 6573 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 TACR2-202ENST00000373307 1740 ntTSL 2 BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 NRAS-201ENST00000369535 4449 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 RPTOR-203ENST00000570891 2286 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 F10-202ENST00000375559 1517 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 TSC1-202ENST00000403810 1507 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 KATNA1-203ENST00000367411 1984 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 RGS3-201ENST00000317613 2542 ntTSL 2 BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 AKAP7-204ENST00000431975 2954 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 DUOXA1-216ENST00000613425 1867 ntTSL 5 BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 COMMD5-202ENST00000402718 1305 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
CLN6Q9NWW5 SNX14-202ENST00000346348 3348 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.11
CLN6Q9NWW5 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 ZNF324-201ENST00000196482 3000 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 AKAP12-204ENST00000402676 8432 ntAPPRIS P4 TSL 5 BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 PIK3IP1-201ENST00000215912 2467 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 PHYHD1-201ENST00000308941 1599 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 AC018892.3-201ENST00000623986 2499 ntBASIC14.39□□□□□ -0.11
CLN6Q9NWW5 RPRD1A-202ENST00000399022 4438 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 HPSE-207ENST00000513463 1458 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 DNAJB1-201ENST00000254322 2264 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 LINC00839-202ENST00000429940 2253 ntTSL 2 BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 NCALD-217ENST00000521599 2289 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 GATA3-202ENST00000379328 3078 ntAPPRIS ALT1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 INTS4P1-202ENST00000587624 2985 ntTSL 5 BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 AKAP9-205ENST00000394564 1356 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 ALOX12B-201ENST00000319144 2502 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 RSBN1-204ENST00000612242 6592 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 RAMP1-201ENST00000254661 910 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 CENPM-204ENST00000402420 688 ntTSL 5 BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 MCFD2-205ENST00000409218 648 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 MCFD2-208ENST00000409973 821 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 AL354836.1-201ENST00000414042 681 ntTSL 2 BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 LINC02247-201ENST00000417135 743 ntTSL 3 BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 ICAM2-202ENST00000418105 1252 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 SLC4A1APP2-201ENST00000424054 1259 ntBASIC14.39□□□□□ -0.11
CLN6Q9NWW5 AC080013.1-203ENST00000468242 720 ntTSL 5 BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 MTUS1-215ENST00000519066 567 ntTSL 4 BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 AP000688.1-201ENST00000535199 1221 ntTSL 2 BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 ICAM2-208ENST00000579788 1103 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 PPP1R1B-208ENST00000580825 1038 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 CRB3-204ENST00000600229 1078 ntAPPRIS ALT2 TSL 2 BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 GRAP-201ENST00000284154 2651 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 PTHLH-209ENST00000545234 1544 ntAPPRIS ALT1 TSL 5 BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 SYNRG-217ENST00000612223 8229 ntAPPRIS P4 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 ZNF165-201ENST00000377325 2107 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 SLC40A1-201ENST00000261024 3442 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 ERICH5-201ENST00000318528 1761 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 USP37-202ENST00000338465 1771 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 SCLY-202ENST00000409736 1774 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 STEAP2-201ENST00000287908 6873 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 ACTL7B-201ENST00000374667 2379 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 ZNF664-204ENST00000538932 4321 ntAPPRIS P1 TSL 3 BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 SGK3-211ENST00000522398 3106 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 PRMT2-207ENST00000440086 1932 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 SFN-201ENST00000339276 1320 ntAPPRIS P1 BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 TMEM117-201ENST00000266534 2758 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 TMEM115-201ENST00000266025 2197 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 PRRT2-207ENST00000572820 2403 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
CLN6Q9NWW5 ARC-201ENST00000356613 2948 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 SLC4A7-212ENST00000446700 4000 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 ZP3-201ENST00000336517 1483 ntAPPRIS P3 TSL 1 (best) BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 CLN3-203ENST00000357806 1469 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 RAPSN-203ENST00000524487 1462 ntTSL 5 BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 ZFP1-209ENST00000570010 1457 ntAPPRIS P1 TSL 2 BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 CD300A-205ENST00000577511 1459 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
CLN6Q9NWW5 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC14.38□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 67.5 ms