Protein–RNA interactions for Protein: Q9NVE4

CCDC87, Coiled-coil domain-containing protein 87, humanhuman

Predictions only

Length 849 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC87Q9NVE4 KLHL24-201ENST00000242810 2345 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC87Q9NVE4 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC87Q9NVE4 TUBGCP3-202ENST00000375669 2723 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC87Q9NVE4 KRT8P14-201ENST00000414254 1442 ntBASIC19.6■□□□□ 0.73
CCDC87Q9NVE4 PEA15-203ENST00000368077 1021 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC87Q9NVE4 PRTFDC1-203ENST00000376378 747 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC87Q9NVE4 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC19.6■□□□□ 0.73
CCDC87Q9NVE4 KRTAP19-9P-201ENST00000421795 191 ntBASIC19.6■□□□□ 0.73
CCDC87Q9NVE4 LINC00642-202ENST00000442515 670 ntTSL 3 BASIC19.6■□□□□ 0.73
CCDC87Q9NVE4 USE1-202ENST00000445667 795 ntAPPRIS ALT1 TSL 5 BASIC19.6■□□□□ 0.73
CCDC87Q9NVE4 TSACC-208ENST00000481479 741 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC87Q9NVE4 AC004066.1-201ENST00000502488 802 ntBASIC19.6■□□□□ 0.73
CCDC87Q9NVE4 FADS2-212ENST00000522639 360 ntTSL 5 BASIC19.6■□□□□ 0.73
CCDC87Q9NVE4 FADS2-215ENST00000574708 385 ntTSL 3 BASIC19.6■□□□□ 0.73
CCDC87Q9NVE4 AC008743.1-201ENST00000596350 813 ntTSL 4 BASIC19.6■□□□□ 0.73
CCDC87Q9NVE4 AL158070.2-201ENST00000623713 1621 ntBASIC19.6■□□□□ 0.73
CCDC87Q9NVE4 MTHFR-217ENST00000641820 1569 ntBASIC19.6■□□□□ 0.73
CCDC87Q9NVE4 SART1-201ENST00000312397 3293 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC87Q9NVE4 GRB7-201ENST00000309156 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC87Q9NVE4 MTA1-201ENST00000331320 2876 ntTSL 1 (best) BASIC19.6■□□□□ 0.73
CCDC87Q9NVE4 PRSS54-201ENST00000219301 1810 ntAPPRIS P1 TSL 5 BASIC19.6■□□□□ 0.73
CCDC87Q9NVE4 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC19.6■□□□□ 0.73
CCDC87Q9NVE4 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC19.6■□□□□ 0.73
CCDC87Q9NVE4 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC87Q9NVE4 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC87Q9NVE4 EIF2B4-206ENST00000451130 1633 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC87Q9NVE4 AXIN1-201ENST00000262320 3643 ntAPPRIS P4 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC87Q9NVE4 FAM83A-201ENST00000276699 1858 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC87Q9NVE4 SLFNL1-203ENST00000372611 1865 ntAPPRIS ALT2 TSL 2 BASIC19.59■□□□□ 0.73
CCDC87Q9NVE4 NMNAT3-201ENST00000296202 1569 ntAPPRIS P1 TSL 5 BASIC19.59■□□□□ 0.73
CCDC87Q9NVE4 TMEM256-201ENST00000302422 486 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC87Q9NVE4 EIF3FP3-201ENST00000434851 1086 ntBASIC19.59■□□□□ 0.73
CCDC87Q9NVE4 AL162457.2-202ENST00000442888 679 ntTSL 5 BASIC19.59■□□□□ 0.73
CCDC87Q9NVE4 IMP3P2-201ENST00000489760 475 ntBASIC19.59■□□□□ 0.73
CCDC87Q9NVE4 PPY2P-201ENST00000582808 702 ntBASIC19.59■□□□□ 0.73
CCDC87Q9NVE4 PPY2P-202ENST00000583761 657 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC87Q9NVE4 FBXL12-212ENST00000592067 879 ntTSL 2 BASIC19.59■□□□□ 0.73
CCDC87Q9NVE4 AC010503.1-201ENST00000596027 520 ntTSL 5 BASIC19.59■□□□□ 0.73
CCDC87Q9NVE4 SPCS2P2-201ENST00000603270 608 ntBASIC19.59■□□□□ 0.73
CCDC87Q9NVE4 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC19.59■□□□□ 0.73
CCDC87Q9NVE4 AC091812.3-201ENST00000621362 345 ntBASIC19.59■□□□□ 0.73
CCDC87Q9NVE4 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC87Q9NVE4 CCDC83-201ENST00000280245 2358 ntAPPRIS P3 TSL 2 BASIC19.59■□□□□ 0.73
CCDC87Q9NVE4 LINC00658-202ENST00000420529 1542 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC87Q9NVE4 GUCY1A2-202ENST00000347596 2532 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC87Q9NVE4 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC87Q9NVE4 ADGRB2-202ENST00000373658 5414 ntAPPRIS ALT2 TSL 5 BASIC19.59■□□□□ 0.73
CCDC87Q9NVE4 PPP1R18-206ENST00000615892 1448 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC87Q9NVE4 INPP4A-204ENST00000409540 3231 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC87Q9NVE4 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC87Q9NVE4 LCK-201ENST00000333070 2166 ntTSL 1 (best) BASIC19.59■□□□□ 0.73
CCDC87Q9NVE4 NAT9-201ENST00000357814 1875 ntTSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC87Q9NVE4 PPHLN1-204ENST00000358314 1643 ntTSL 2 BASIC19.58■□□□□ 0.73
CCDC87Q9NVE4 AL035460.1-201ENST00000380593 1866 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.73
CCDC87Q9NVE4 CMKLR1-206ENST00000552995 1890 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC87Q9NVE4 SORT1-201ENST00000256637 7028 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC87Q9NVE4 FAM181A-201ENST00000267594 1816 ntTSL 2 BASIC19.58■□□□□ 0.73
CCDC87Q9NVE4 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC19.58■□□□□ 0.73
CCDC87Q9NVE4 COLEC11-209ENST00000418971 1595 ntTSL 2 BASIC19.58■□□□□ 0.73
CCDC87Q9NVE4 SNRNP27-202ENST00000409116 1339 ntTSL 5 BASIC19.58■□□□□ 0.73
CCDC87Q9NVE4 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC19.58■□□□□ 0.73
CCDC87Q9NVE4 SMG5-201ENST00000361813 4559 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.73
CCDC87Q9NVE4 IGLC7-201ENST00000390331 441 ntAPPRIS P1 BASIC19.58■□□□□ 0.72
CCDC87Q9NVE4 CRYBA2-202ENST00000392096 708 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC87Q9NVE4 LSM5-207ENST00000410044 687 ntTSL 3 BASIC19.58■□□□□ 0.72
CCDC87Q9NVE4 HNRNPA1P63-201ENST00000427917 963 ntBASIC19.58■□□□□ 0.72
CCDC87Q9NVE4 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC19.58■□□□□ 0.72
CCDC87Q9NVE4 PGAP2-224ENST00000490830 810 ntTSL 3 BASIC19.58■□□□□ 0.72
CCDC87Q9NVE4 AC106738.2-201ENST00000559802 557 ntTSL 4 BASIC19.58■□□□□ 0.72
CCDC87Q9NVE4 AC007342.4-201ENST00000566383 584 ntTSL 4 BASIC19.58■□□□□ 0.72
CCDC87Q9NVE4 AC011474.2-201ENST00000579268 543 ntTSL 3 BASIC19.58■□□□□ 0.72
CCDC87Q9NVE4 AC008736.2-201ENST00000587554 516 ntTSL 2 BASIC19.58■□□□□ 0.72
CCDC87Q9NVE4 KLK3-207ENST00000595952 969 ntTSL 3 BASIC19.58■□□□□ 0.72
CCDC87Q9NVE4 KLK11-210ENST00000600362 759 ntTSL 3 BASIC19.58■□□□□ 0.72
CCDC87Q9NVE4 C17orf50-202ENST00000604830 477 ntTSL 3 BASIC19.58■□□□□ 0.72
CCDC87Q9NVE4 AC007663.3-201ENST00000609632 465 ntBASIC19.58■□□□□ 0.72
CCDC87Q9NVE4 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC87Q9NVE4 SCARF1-205ENST00000571272 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC87Q9NVE4 ZNF419-204ENST00000415379 2186 ntAPPRIS ALT2 TSL 2 BASIC19.58■□□□□ 0.72
CCDC87Q9NVE4 MAGEA2B-201ENST00000331220 1946 ntAPPRIS P1 TSL 2 BASIC19.58■□□□□ 0.72
CCDC87Q9NVE4 RASA4-202ENST00000449970 2787 ntAPPRIS ALT1 TSL 2 BASIC19.58■□□□□ 0.72
CCDC87Q9NVE4 VASP-201ENST00000245932 2305 ntAPPRIS P1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC87Q9NVE4 DACH1-203ENST00000619232 2986 ntAPPRIS ALT2 TSL 5 BASIC19.58■□□□□ 0.72
CCDC87Q9NVE4 CDCP1-201ENST00000296129 6006 ntAPPRIS P3 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC87Q9NVE4 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC19.58■□□□□ 0.72
CCDC87Q9NVE4 DCST1-201ENST00000295542 2279 ntAPPRIS P3 TSL 2 BASIC19.58■□□□□ 0.72
CCDC87Q9NVE4 PRKCB-202ENST00000321728 2689 ntAPPRIS ALT1 TSL 1 (best) BASIC19.58■□□□□ 0.72
CCDC87Q9NVE4 XKR4-203ENST00000622811 3907 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
CCDC87Q9NVE4 RWDD4-201ENST00000326397 2641 ntAPPRIS P2 TSL 2 BASIC19.57■□□□□ 0.72
CCDC87Q9NVE4 SLC5A10-202ENST00000395643 1982 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC87Q9NVE4 GABRA5-202ENST00000355395 2183 ntAPPRIS P1 TSL 5 BASIC19.57■□□□□ 0.72
CCDC87Q9NVE4 WIZ-201ENST00000263381 5695 ntAPPRIS P2 TSL 2 BASIC19.57■□□□□ 0.72
CCDC87Q9NVE4 HTR4-209ENST00000521530 1323 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC87Q9NVE4 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC19.57■□□□□ 0.72
CCDC87Q9NVE4 HHATL-205ENST00000441594 1865 ntAPPRIS P1 TSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC87Q9NVE4 ZNRD1ASP-217ENST00000437417 1497 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC87Q9NVE4 DYDC1-201ENST00000372202 612 ntAPPRIS P1 TSL 3 BASIC19.57■□□□□ 0.72
CCDC87Q9NVE4 MAPK15-203ENST00000395108 765 ntTSL 1 (best) BASIC19.57■□□□□ 0.72
CCDC87Q9NVE4 SNHG17-201ENST00000413755 648 ntTSL 3 BASIC19.57■□□□□ 0.72
CCDC87Q9NVE4 POM121L8P-201ENST00000417732 1281 ntBASIC19.57■□□□□ 0.72
Retrieved 100 of 98,524 protein–RNA pairs in 73.9 ms