Protein–RNA interactions for Protein: Q9BRP4

PAAF1, Proteasomal ATPase-associated factor 1, humanhuman

Predictions only

Length 392 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PAAF1Q9BRP4 CDC42EP4-201ENST00000335793 3272 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 KHNYN-202ENST00000553935 3359 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 IPMK-201ENST00000373935 6133 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 TRIM27-202ENST00000377199 2967 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 XRCC3-209ENST00000554913 2539 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 AMT-224ENST00000635808 1610 ntTSL 5 BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 SLC2A13-202ENST00000380858 3082 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 AFTPH-202ENST00000238856 4040 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 CCDC144B-202ENST00000445752 2197 ntTSL 2 BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 CCNC-209ENST00000520371 2186 ntTSL 5 BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 RNF32-204ENST00000392743 1746 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 LAP3-201ENST00000226299 2213 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 NKX3-1-201ENST00000380871 3271 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 SPAG11B-203ENST00000359758 612 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 MS4A13-201ENST00000378185 808 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 MDP1-202ENST00000396833 582 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 MIR1908-201ENST00000410394 80 ntBASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 FO681548.1-201ENST00000455617 1132 ntBASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 RPL8-205ENST00000527914 551 ntTSL 3 BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 ELOF1-208ENST00000591912 899 ntTSL 5 BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 TECR-220ENST00000600083 1204 ntTSL 2 BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 AP005019.2-201ENST00000615104 511 ntBASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 FLYWCH1-203ENST00000416288 4963 ntAPPRIS P3 TSL 1 (best) BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 DNAJC16-201ENST00000375838 2357 ntTSL 5 BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 HS6ST2-201ENST00000370833 1938 ntTSL 5 BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 SPRYD7-201ENST00000361840 3053 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 CNKSR1-202ENST00000374253 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 TIMM44-201ENST00000270538 2075 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 KAT8-201ENST00000219797 1525 ntAPPRIS P1 TSL 1 (best) BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 DMTN-223ENST00000523782 2235 ntAPPRIS P1 TSL 5 BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 BRF1-206ENST00000446501 2858 ntTSL 2 BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 KIAA1586-203ENST00000545356 2883 ntTSL 2 BASIC16.6■□□□□ 0.25
PAAF1Q9BRP4 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 GDE1-201ENST00000353258 2958 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 RFPL2-203ENST00000400237 2407 ntAPPRIS P3 TSL 2 BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 PIGP-207ENST00000464265 3437 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 AL513523.2-202ENST00000427283 2040 ntBASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 CD34-202ENST00000356522 2874 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 RAP1GDS1-203ENST00000380158 2085 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 RNU1-114P-201ENST00000365297 166 ntBASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 RPF1-202ENST00000370656 724 ntTSL 2 BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 EDN2-201ENST00000372587 1241 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 CYB5R3-203ENST00000402438 1050 ntTSL 5 BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 RBM24-203ENST00000425446 1034 ntTSL 3 BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 AC072022.1-201ENST00000450760 1144 ntAPPRIS P1 TSL 3 BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 KLC4-205ENST00000458460 1251 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 AC022494.1-201ENST00000466044 728 ntBASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 NME2-206ENST00000513177 692 ntAPPRIS P1 TSL 2 BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 AC116456.1-201ENST00000526646 815 ntTSL 3 BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 AP001453.3-201ENST00000545800 853 ntTSL 3 BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 DPF3-210ENST00000556509 1138 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 AL133153.2-201ENST00000557524 303 ntTSL 3 BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 AC120498.3-201ENST00000568884 542 ntTSL 4 BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 AC025279.2-201ENST00000569730 653 ntBASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 SPECC1-223ENST00000584527 940 ntTSL 3 BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 AC145423.3-201ENST00000615987 467 ntBASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 BX539320.1-201ENST00000623759 877 ntBASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 ARID1B-222ENST00000637003 1290 ntTSL 5 BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 CTSL-203ENST00000343150 2177 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 AC006064.2-201ENST00000501075 2196 ntTSL 2 BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 PITPNA-201ENST00000313486 3912 ntAPPRIS P2 TSL 5 BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 ACP2-201ENST00000256997 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 NAA50-201ENST00000240922 6135 ntAPPRIS P3 TSL 1 (best) BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 PHKA1-202ENST00000373539 4476 ntTSL 5 BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 AC084364.1-201ENST00000551967 1556 ntBASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 ADAM15-228ENST00000531455 2678 ntAPPRIS ALT2 TSL 2 BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 AL138709.1-201ENST00000614840 1693 ntBASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 EGLN2-207ENST00000593726 2821 ntAPPRIS P1 TSL 1 (best) BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 ZP3-204ENST00000416245 1846 ntTSL 2 BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 AC074117.1-201ENST00000447070 3060 ntTSL 2 BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 PTPN5-201ENST00000358540 3135 ntTSL 1 (best) BASIC16.59■□□□□ 0.25
PAAF1Q9BRP4 AC026691.1-201ENST00000602502 2017 ntBASIC16.58■□□□□ 0.25
PAAF1Q9BRP4 METTL25-201ENST00000248306 2093 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PAAF1Q9BRP4 SMARCD1-202ENST00000394963 3658 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PAAF1Q9BRP4 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PAAF1Q9BRP4 LFNG-205ENST00000402506 2268 ntTSL 2 BASIC16.58■□□□□ 0.25
PAAF1Q9BRP4 DGKZ-202ENST00000343674 3816 ntAPPRIS P3 TSL 2 BASIC16.58■□□□□ 0.25
PAAF1Q9BRP4 ADD1-201ENST00000264758 4045 ntAPPRIS P3 TSL 5 BASIC16.58■□□□□ 0.25
PAAF1Q9BRP4 SCYL1-206ENST00000525364 2584 ntTSL 5 BASIC16.58■□□□□ 0.25
PAAF1Q9BRP4 BEGAIN-201ENST00000355173 2674 ntTSL 1 (best) BASIC16.58■□□□□ 0.25
PAAF1Q9BRP4 TRIM7-201ENST00000274773 2840 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.25
PAAF1Q9BRP4 MZF1-201ENST00000215057 2905 ntAPPRIS P1 TSL 1 (best) BASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 DGKZ-201ENST00000318201 3213 ntTSL 2 BASIC16.58■□□□□ 0.24
PAAF1Q9BRP4 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.58■□□□□ 0.24
Retrieved 100 of 98,524 protein–RNA pairs in 77.1 ms