Protein–RNA interactions for Protein: Q96M95

CCDC42, Coiled-coil domain-containing protein 42, humanhuman

Predictions only

Length 316 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42Q96M95 AC254562.3-201ENST00000626627 631 ntTSL 5 BASIC16.99■□□□□ 0.31
CCDC42Q96M95 CKMT1B-215ENST00000627381 1074 ntTSL 5 BASIC16.99■□□□□ 0.31
CCDC42Q96M95 DUSP11-201ENST00000272444 1653 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC42Q96M95 SLC26A5-202ENST00000339444 2474 ntTSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC42Q96M95 CPSF7-202ENST00000394888 3650 ntAPPRIS P4 TSL 2 BASIC16.99■□□□□ 0.31
CCDC42Q96M95 MGAT1-202ENST00000333055 8863 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
CCDC42Q96M95 APBB1-217ENST00000608645 1925 ntTSL 5 BASIC16.99■□□□□ 0.31
CCDC42Q96M95 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC42Q96M95 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC42Q96M95 SNHG18-201ENST00000508179 1799 ntTSL 2 BASIC16.99■□□□□ 0.31
CCDC42Q96M95 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC16.99■□□□□ 0.31
CCDC42Q96M95 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC42Q96M95 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC42Q96M95 ACSM1-204ENST00000520010 1894 ntAPPRIS P1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC42Q96M95 PLD3-204ENST00000409281 2115 ntAPPRIS P1 TSL 2 BASIC16.99■□□□□ 0.31
CCDC42Q96M95 NBEA-203ENST00000379939 10738 ntAPPRIS ALT1 TSL 5 BASIC16.99■□□□□ 0.31
CCDC42Q96M95 BORCS8-203ENST00000477565 1489 ntAPPRIS ALT1 TSL 1 (best) BASIC16.99■□□□□ 0.31
CCDC42Q96M95 CDC42EP4-202ENST00000439510 2879 ntTSL 2 BASIC16.99■□□□□ 0.31
CCDC42Q96M95 CRHBP-201ENST00000274368 1980 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC42Q96M95 KREMEN1-201ENST00000327813 2719 ntAPPRIS P3 TSL 2 BASIC16.98■□□□□ 0.31
CCDC42Q96M95 DYSF-201ENST00000258104 6796 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC42Q96M95 DYSF-204ENST00000409582 6790 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC42Q96M95 DYSF-210ENST00000413539 6769 ntAPPRIS ALT2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC42Q96M95 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
CCDC42Q96M95 ELP4-219ENST00000639878 1583 ntTSL 5 BASIC16.98■□□□□ 0.31
CCDC42Q96M95 ZNF286A-218ENST00000583566 1806 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC42Q96M95 RPTOR-201ENST00000306801 6408 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC42Q96M95 AL928970.1-201ENST00000422679 2923 ntTSL 5 BASIC16.98■□□□□ 0.31
CCDC42Q96M95 SESN1-202ENST00000356644 2676 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC42Q96M95 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC42Q96M95 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC42Q96M95 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC16.98■□□□□ 0.31
CCDC42Q96M95 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC42Q96M95 TUFT1-201ENST00000353024 2107 ntTSL 2 BASIC16.98■□□□□ 0.31
CCDC42Q96M95 NEK7-201ENST00000367383 586 ntTSL 2 BASIC16.98■□□□□ 0.31
CCDC42Q96M95 TEX30-202ENST00000376021 1038 ntTSL 2 BASIC16.98■□□□□ 0.31
CCDC42Q96M95 TEX30-206ENST00000376032 1165 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC42Q96M95 TMEM239-202ENST00000380585 571 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC42Q96M95 DHRS4-203ENST00000397075 727 ntTSL 2 BASIC16.98■□□□□ 0.31
CCDC42Q96M95 CCNL2-202ENST00000408918 1186 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC42Q96M95 AC026396.1-201ENST00000419388 421 ntBASIC16.98■□□□□ 0.31
CCDC42Q96M95 ELP6-209ENST00000446787 894 ntTSL 3 BASIC16.98■□□□□ 0.31
CCDC42Q96M95 AL390729.1-201ENST00000456651 587 ntTSL 2 BASIC16.98■□□□□ 0.31
CCDC42Q96M95 AC106791.1-202ENST00000508281 1148 ntTSL 2 BASIC16.98■□□□□ 0.31
CCDC42Q96M95 RNA5SP416-201ENST00000516838 111 ntBASIC16.98■□□□□ 0.31
CCDC42Q96M95 KRT126P-201ENST00000549467 1181 ntBASIC16.98■□□□□ 0.31
CCDC42Q96M95 RPL18-209ENST00000550645 463 ntTSL 5 BASIC16.98■□□□□ 0.31
CCDC42Q96M95 BRF1-219ENST00000551787 824 ntTSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC42Q96M95 RPL18-214ENST00000552588 559 ntTSL 3 BASIC16.98■□□□□ 0.31
CCDC42Q96M95 NDUFAB1-205ENST00000570319 885 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC42Q96M95 AC008403.2-204ENST00000600650 1006 ntTSL 3 BASIC16.98■□□□□ 0.31
CCDC42Q96M95 AC016727.1-203ENST00000603199 540 ntTSL 4 BASIC16.98■□□□□ 0.31
CCDC42Q96M95 CFAP53-201ENST00000398545 1851 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC42Q96M95 PHLDB1-223ENST00000600882 5479 ntAPPRIS P3 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC42Q96M95 TBX5-203ENST00000405440 2203 ntAPPRIS P1 TSL 1 (best) BASIC16.98■□□□□ 0.31
CCDC42Q96M95 IRF3-217ENST00000597198 1741 ntAPPRIS P1 TSL 2 BASIC16.98■□□□□ 0.31
CCDC42Q96M95 HNRNPA0-201ENST00000314940 8726 ntAPPRIS P1 BASIC16.98■□□□□ 0.31
CCDC42Q96M95 SATB2-205ENST00000443023 6194 ntTSL 5 BASIC16.98■□□□□ 0.31
CCDC42Q96M95 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC16.98■□□□□ 0.31
CCDC42Q96M95 WDR6-222ENST00000615452 1949 ntTSL 5 BASIC16.98■□□□□ 0.31
CCDC42Q96M95 UBE2D3-207ENST00000394801 2368 ntAPPRIS ALT1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC42Q96M95 DMAC2-201ENST00000221943 1692 ntAPPRIS P1 TSL 2 BASIC16.97■□□□□ 0.31
CCDC42Q96M95 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC42Q96M95 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC42Q96M95 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC42Q96M95 IMPDH1-203ENST00000354269 2580 ntTSL 2 BASIC16.97■□□□□ 0.31
CCDC42Q96M95 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC16.97■□□□□ 0.31
CCDC42Q96M95 SYNGR2-207ENST00000590201 2239 ntTSL 5 BASIC16.97■□□□□ 0.31
CCDC42Q96M95 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
CCDC42Q96M95 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC42Q96M95 GLMP-214ENST00000614643 1851 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
CCDC42Q96M95 DDX56-201ENST00000258772 2336 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC42Q96M95 SLC22A16-202ENST00000368919 1987 ntAPPRIS P2 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC42Q96M95 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC42Q96M95 DUOXA1-210ENST00000559014 1965 ntTSL 2 BASIC16.97■□□□□ 0.31
CCDC42Q96M95 FECH-202ENST00000382873 2526 ntAPPRIS ALT2 TSL 2 BASIC16.97■□□□□ 0.31
CCDC42Q96M95 CRLF2-203ENST00000400841 1639 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC42Q96M95 XKR5-201ENST00000618742 4893 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC42Q96M95 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC42Q96M95 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC42Q96M95 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
CCDC42Q96M95 CLIC1-208ENST00000375784 1254 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC42Q96M95 CST3-201ENST00000376925 873 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC42Q96M95 HIST1H2BL-201ENST00000377401 488 ntAPPRIS P1 BASIC16.97■□□□□ 0.31
CCDC42Q96M95 SH3TC1-202ENST00000382521 829 ntTSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC42Q96M95 HLA-H-201ENST00000383620 1096 ntBASIC16.97■□□□□ 0.31
CCDC42Q96M95 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC16.97■□□□□ 0.31
CCDC42Q96M95 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC16.97■□□□□ 0.31
CCDC42Q96M95 EEF1DP4-201ENST00000446006 880 ntBASIC16.97■□□□□ 0.31
CCDC42Q96M95 TMEM44-AS1-203ENST00000453671 1119 ntTSL 2 BASIC16.97■□□□□ 0.31
CCDC42Q96M95 AC135050.2-203ENST00000529564 725 ntAPPRIS P1 TSL 4 BASIC16.97■□□□□ 0.31
CCDC42Q96M95 MKNK2-212ENST00000591588 631 ntTSL 2 BASIC16.97■□□□□ 0.31
CCDC42Q96M95 AC026979.3-201ENST00000607315 403 ntBASIC16.97■□□□□ 0.31
CCDC42Q96M95 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC16.97■□□□□ 0.31
CCDC42Q96M95 CIAPIN1-207ENST00000565961 1814 ntTSL 3 BASIC16.97■□□□□ 0.31
CCDC42Q96M95 CALB2-202ENST00000349553 1373 ntTSL 5 BASIC16.97■□□□□ 0.31
CCDC42Q96M95 FGD5P1-202ENST00000614866 2498 ntBASIC16.97■□□□□ 0.31
CCDC42Q96M95 ITFG1-201ENST00000320640 3400 ntAPPRIS P1 TSL 1 (best) BASIC16.97■□□□□ 0.31
CCDC42Q96M95 CEACAM16-201ENST00000405314 1583 ntAPPRIS P1 TSL 5 BASIC16.97■□□□□ 0.31
CCDC42Q96M95 MROH4P-201ENST00000431302 1578 ntBASIC16.97■□□□□ 0.31
Retrieved 100 of 98,524 protein–RNA pairs in 75.5 ms