Protein–RNA interactions for Protein: Q93096

PTP4A1, Protein tyrosine phosphatase type IVA 1, humanhuman

Predictions only

Length 173 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A1Q93096 CBR1-202ENST00000399191 838 ntTSL 3 BASIC14.15□□□□□ -0.14
PTP4A1Q93096 UPF3AP3-201ENST00000420996 769 ntBASIC14.15□□□□□ -0.14
PTP4A1Q93096 AC006042.2-201ENST00000428660 568 ntTSL 4 BASIC14.15□□□□□ -0.14
PTP4A1Q93096 SPDYE11-202ENST00000450699 704 ntBASIC14.15□□□□□ -0.14
PTP4A1Q93096 CEND1P1-201ENST00000451006 455 ntBASIC14.15□□□□□ -0.14
PTP4A1Q93096 RN7SL589P-201ENST00000481268 310 ntBASIC14.15□□□□□ -0.14
PTP4A1Q93096 AC112482.1-201ENST00000492080 688 ntBASIC14.15□□□□□ -0.14
PTP4A1Q93096 AC009053.3-201ENST00000567148 574 ntTSL 4 BASIC14.15□□□□□ -0.14
PTP4A1Q93096 SPDYE9P-201ENST00000570642 692 ntBASIC14.15□□□□□ -0.14
PTP4A1Q93096 AC007192.2-201ENST00000600364 463 ntTSL 5 BASIC14.15□□□□□ -0.14
PTP4A1Q93096 SPDYE10P-202ENST00000612005 668 ntBASIC14.15□□□□□ -0.14
PTP4A1Q93096 SPDYE8P-202ENST00000612377 668 ntBASIC14.15□□□□□ -0.14
PTP4A1Q93096 TEX264-216ENST00000614067 1174 ntAPPRIS ALT2 TSL 3 BASIC14.15□□□□□ -0.14
PTP4A1Q93096 AC020934.3-201ENST00000639810 348 ntAPPRIS P1 TSL 3 BASIC14.15□□□□□ -0.14
PTP4A1Q93096 RGPD8-201ENST00000302558 5576 ntAPPRIS P2 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTP4A1Q93096 PERM1-201ENST00000341290 3035 ntAPPRIS ALT2 TSL 2 BASIC14.15□□□□□ -0.14
PTP4A1Q93096 DLGAP4-205ENST00000401952 4881 ntAPPRIS P4 TSL 5 BASIC14.15□□□□□ -0.14
PTP4A1Q93096 ZNF804B-201ENST00000333190 4659 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTP4A1Q93096 ZNF706-201ENST00000311212 2615 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTP4A1Q93096 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTP4A1Q93096 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC14.15□□□□□ -0.14
PTP4A1Q93096 ELL2P1-201ENST00000413990 1906 ntBASIC14.15□□□□□ -0.14
PTP4A1Q93096 PHYH-203ENST00000396920 1829 ntTSL 5 BASIC14.15□□□□□ -0.14
PTP4A1Q93096 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC14.15□□□□□ -0.14
PTP4A1Q93096 HAUS2-208ENST00000568876 1702 ntTSL 4 BASIC14.15□□□□□ -0.14
PTP4A1Q93096 TGFB1-201ENST00000221930 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTP4A1Q93096 MRGPRX3-201ENST00000396275 1639 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTP4A1Q93096 ABCA1-203ENST00000423487 1540 ntTSL 2 BASIC14.15□□□□□ -0.14
PTP4A1Q93096 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC14.15□□□□□ -0.14
PTP4A1Q93096 KCNC3-202ENST00000474951 3347 ntTSL 2 BASIC14.15□□□□□ -0.14
PTP4A1Q93096 PTPRS-205ENST00000588012 5993 ntAPPRIS P3 TSL 1 (best) BASIC14.15□□□□□ -0.14
PTP4A1Q93096 RHD-207ENST00000454452 1303 ntTSL 1 (best) BASIC14.15□□□□□ -0.15
PTP4A1Q93096 GIGYF1-201ENST00000275732 6530 ntAPPRIS P1 TSL 1 (best) BASIC14.15□□□□□ -0.15
PTP4A1Q93096 ADHFE1-203ENST00000396623 1990 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PTP4A1Q93096 VAT1-201ENST00000355653 2734 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PTP4A1Q93096 NEK7-202ENST00000367385 4149 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
PTP4A1Q93096 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC14.14□□□□□ -0.15
PTP4A1Q93096 SYP-207ENST00000479808 1850 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PTP4A1Q93096 AC026748.1-201ENST00000624349 3251 ntBASIC14.14□□□□□ -0.15
PTP4A1Q93096 MFRP-205ENST00000619721 3917 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PTP4A1Q93096 SPATC1-202ENST00000447830 1795 ntAPPRIS ALT2 TSL 1 (best) BASIC14.14□□□□□ -0.15
PTP4A1Q93096 MTX3-201ENST00000509852 1655 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PTP4A1Q93096 KCNC1-201ENST00000265969 4295 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
PTP4A1Q93096 TRIM29-210ENST00000528870 2217 ntTSL 2 BASIC14.14□□□□□ -0.15
PTP4A1Q93096 HYAL1-209ENST00000618175 2225 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
PTP4A1Q93096 NDRG2-202ENST00000298687 2122 ntAPPRIS P4 TSL 1 (best) BASIC14.14□□□□□ -0.15
PTP4A1Q93096 LINC00841-201ENST00000451929 2126 ntTSL 2 BASIC14.14□□□□□ -0.15
PTP4A1Q93096 RALYL-207ENST00000521695 1924 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
PTP4A1Q93096 KLK5-203ENST00000593428 1365 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PTP4A1Q93096 AC007292.2-201ENST00000593524 1812 ntBASIC14.14□□□□□ -0.15
PTP4A1Q93096 KLK8-202ENST00000320838 456 ntTSL 5 BASIC14.14□□□□□ -0.15
PTP4A1Q93096 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
PTP4A1Q93096 COA5-202ENST00000409997 557 ntTSL 4 BASIC14.14□□□□□ -0.15
PTP4A1Q93096 AL158071.2-201ENST00000423380 815 ntTSL 3 BASIC14.14□□□□□ -0.15
PTP4A1Q93096 AP000842.3-202ENST00000569238 1080 ntBASIC14.14□□□□□ -0.15
PTP4A1Q93096 PDCD2L-203ENST00000587065 492 ntTSL 3 BASIC14.14□□□□□ -0.15
PTP4A1Q93096 CROCCP3-203ENST00000589964 255 ntTSL 3 BASIC14.14□□□□□ -0.15
PTP4A1Q93096 AC099811.2-203ENST00000592574 958 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
PTP4A1Q93096 MRPL34-205ENST00000600434 793 ntAPPRIS P2 TSL 3 BASIC14.14□□□□□ -0.15
PTP4A1Q93096 AC073263.1-201ENST00000616370 494 ntTSL 3 BASIC14.14□□□□□ -0.15
PTP4A1Q93096 LINC01635-202ENST00000635097 1023 ntTSL 5 BASIC14.14□□□□□ -0.15
PTP4A1Q93096 MOCS1-201ENST00000340692 2747 ntAPPRIS P1 TSL 5 BASIC14.14□□□□□ -0.15
PTP4A1Q93096 OSBP2-209ENST00000438716 2747 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
PTP4A1Q93096 PRKRIP1-201ENST00000397912 2159 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PTP4A1Q93096 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC14.14□□□□□ -0.15
PTP4A1Q93096 NEDD4L-202ENST00000356462 3335 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PTP4A1Q93096 JMJD1C-202ENST00000399262 8666 ntAPPRIS P3 TSL 5 BASIC14.14□□□□□ -0.15
PTP4A1Q93096 MAPK7-202ENST00000308406 3149 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PTP4A1Q93096 MIOS-201ENST00000340080 3453 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PTP4A1Q93096 TOMM70-201ENST00000284320 4409 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
PTP4A1Q93096 ELP5-201ENST00000354429 1304 ntAPPRIS P2 TSL 5 BASIC14.14□□□□□ -0.15
PTP4A1Q93096 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC14.14□□□□□ -0.15
PTP4A1Q93096 CLEC18A-201ENST00000288040 2155 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
PTP4A1Q93096 NAA30-204ENST00000556492 7644 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
PTP4A1Q93096 RRBP1-204ENST00000377813 5041 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
PTP4A1Q93096 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC14.13□□□□□ -0.15
PTP4A1Q93096 CLEC17A-202ENST00000417570 1399 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PTP4A1Q93096 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
PTP4A1Q93096 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PTP4A1Q93096 DKKL1-201ENST00000221498 1222 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
PTP4A1Q93096 CCNL1-201ENST00000295925 549 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
PTP4A1Q93096 PIP5K1A-202ENST00000368888 2134 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
PTP4A1Q93096 HCCS-203ENST00000380763 1000 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PTP4A1Q93096 RPSAP43-201ENST00000402237 625 ntBASIC14.13□□□□□ -0.15
PTP4A1Q93096 RPP21-221ENST00000428040 594 ntTSL 2 BASIC14.13□□□□□ -0.15
PTP4A1Q93096 AL669831.5-201ENST00000434264 844 ntTSL 5 BASIC14.13□□□□□ -0.15
PTP4A1Q93096 SPCS2P4-201ENST00000436160 681 ntBASIC14.13□□□□□ -0.15
PTP4A1Q93096 RPP21-224ENST00000442966 525 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
PTP4A1Q93096 AKIRIN1-203ENST00000446189 1243 ntTSL 2 BASIC14.13□□□□□ -0.15
PTP4A1Q93096 AC078942.1-201ENST00000448698 589 ntTSL 4 BASIC14.13□□□□□ -0.15
PTP4A1Q93096 LINC01640-201ENST00000452505 550 ntTSL 4 BASIC14.13□□□□□ -0.15
PTP4A1Q93096 AC018730.1-201ENST00000454183 327 ntTSL 3 BASIC14.13□□□□□ -0.15
PTP4A1Q93096 CCND1-203ENST00000536559 553 ntTSL 3 BASIC14.13□□□□□ -0.15
PTP4A1Q93096 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC14.13□□□□□ -0.15
PTP4A1Q93096 AC092865.5-201ENST00000545435 363 ntBASIC14.13□□□□□ -0.15
PTP4A1Q93096 AC090515.4-201ENST00000558042 450 ntTSL 3 BASIC14.13□□□□□ -0.15
PTP4A1Q93096 AC009630.3-201ENST00000581909 729 ntTSL 5 BASIC14.13□□□□□ -0.15
PTP4A1Q93096 AC010624.2-201ENST00000600998 575 ntTSL 5 BASIC14.13□□□□□ -0.15
PTP4A1Q93096 YTHDC1-202ENST00000355665 3244 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
PTP4A1Q93096 ALDH3B2-201ENST00000349015 2649 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 30.6 ms