Protein–RNA interactions for Protein: Q8TAU0

NKX2-3, Homeobox protein Nkx-2.3, humanhuman

Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-3Q8TAU0 TGFB1I1-203ENST00000394863 1898 ntAPPRIS ALT1 TSL 1 (best) BASIC18.46■□□□□ 0.54
NKX2-3Q8TAU0 KANK1-204ENST00000382293 5249 ntTSL 1 (best) BASIC18.46■□□□□ 0.54
NKX2-3Q8TAU0 SSC5D-201ENST00000389623 4845 ntAPPRIS P3 TSL 1 (best) BASIC18.46■□□□□ 0.54
NKX2-3Q8TAU0 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 LINC00668-206ENST00000581725 1902 ntTSL 2 BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 MAD1L1-202ENST00000399654 2762 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 AC091100.1-201ENST00000558424 2354 ntTSL 2 BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 NRXN1-229ENST00000628515 3243 ntTSL 5 BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 C11orf71-202ENST00000623205 1980 ntAPPRIS ALT2 BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 GOLIM4-201ENST00000309027 2100 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 ARHGEF1-204ENST00000378152 2986 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 AC007952.1-202ENST00000399083 1173 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 PFN1P12-201ENST00000455938 534 ntBASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 SELENOT-203ENST00000477889 944 ntTSL 5 BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 CRYGN-205ENST00000491928 698 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 APRT-204ENST00000563655 709 ntTSL 5 BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 UBL5-208ENST00000593087 320 ntTSL 3 BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 HIST1H2BO-201ENST00000616182 381 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 AC106017.2-201ENST00000631194 1173 ntTSL 2 BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 CDH1-202ENST00000422392 2567 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 LYAR-201ENST00000343470 1569 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 FKBP1C-201ENST00000370659 1579 ntAPPRIS P1 BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 SLC22A6-203ENST00000421062 1560 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 KAZN-203ENST00000376030 6030 ntAPPRIS P1 TSL 5 BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 LINC00996-201ENST00000477392 2043 ntTSL 1 (best) BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 EPS8L2-218ENST00000530636 2469 ntAPPRIS P2 TSL 1 (best) BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 SMURF2-201ENST00000262435 2918 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 CELF3-201ENST00000290583 3246 ntAPPRIS P3 TSL 1 (best) BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 CTSW-201ENST00000307886 1300 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 CPA1-201ENST00000011292 1487 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 ZDHHC20-209ENST00000542645 5315 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 PDGFRL-203ENST00000541323 1905 ntAPPRIS P1 TSL 2 BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 GFAP-225ENST00000638281 2099 ntTSL 5 BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 C14orf79-205ENST00000549240 2503 ntAPPRIS ALT2 TSL 2 BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 SPATA18-202ENST00000419395 2816 ntTSL 2 BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 C2CD4A-201ENST00000355522 3445 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC18.45■□□□□ 0.54
NKX2-3Q8TAU0 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 GRB10-208ENST00000403097 5432 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 TMEM139-205ENST00000410004 2114 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 PRRG1-203ENST00000463135 1663 ntTSL 2 BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 ENOSF1-209ENST00000580982 1397 ntTSL 5 BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 L1CAM-205ENST00000370060 5113 ntAPPRIS P4 TSL 5 BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 RAB29-201ENST00000235932 1723 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 BAP1-202ENST00000460680 3937 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 PSMC5-209ENST00000580864 1552 ntTSL 5 BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 SULF2-201ENST00000359930 4915 ntAPPRIS P4 TSL 1 (best) BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 IFNL2-201ENST00000331982 737 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 LBX2-201ENST00000341396 886 ntTSL 3 BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 RPL13A-201ENST00000391857 1181 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 SYNPR-202ENST00000450542 1004 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 CTBP2P5-201ENST00000454986 1264 ntBASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 AC104596.2-201ENST00000512793 793 ntBASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 GNLY-210ENST00000524600 750 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 AC000032.1-201ENST00000562538 491 ntTSL 2 BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 ARL16-210ENST00000574938 751 ntTSL 2 BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 AC015910.1-201ENST00000579400 975 ntBASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 RN7SL190P-201ENST00000582519 257 ntBASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 AC233724.13-201ENST00000598383 410 ntBASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 AC000095.1-201ENST00000603208 874 ntBASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 TIGD2-202ENST00000603357 3217 ntAPPRIS P1 TSL 4 BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 MAP4K3-201ENST00000263881 4362 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 SPAAR-202ENST00000443779 1612 ntAPPRIS P1 TSL 2 BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 ADCY1-204ENST00000621543 1647 ntTSL 5 BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 AMT-224ENST00000635808 1610 ntTSL 5 BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 NFE2L1-214ENST00000582155 1998 ntTSL 2 BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 NDUFA6-AS1-203ENST00000439129 2950 ntTSL 5 BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 WIPF3-202ENST00000409123 3491 ntAPPRIS ALT2 TSL 5 BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 EIF2B3-201ENST00000360403 1659 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 TK1-203ENST00000588734 1681 ntTSL 2 BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 PARD6G-201ENST00000353265 3868 ntAPPRIS P1 TSL 1 (best) BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC18.44■□□□□ 0.54
NKX2-3Q8TAU0 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
NKX2-3Q8TAU0 HNRNPK-204ENST00000376263 2942 ntAPPRIS P4 TSL 1 (best) BASIC18.43■□□□□ 0.54
NKX2-3Q8TAU0 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
NKX2-3Q8TAU0 YY1AP1-201ENST00000295566 2626 ntAPPRIS P4 TSL 2 BASIC18.43■□□□□ 0.54
NKX2-3Q8TAU0 MEG9-201ENST00000429368 2638 ntTSL 2 BASIC18.43■□□□□ 0.54
NKX2-3Q8TAU0 ATP2A3-206ENST00000397043 3197 ntAPPRIS ALT1 TSL 1 (best) BASIC18.43■□□□□ 0.54
NKX2-3Q8TAU0 CARNS1-201ENST00000307823 3942 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
NKX2-3Q8TAU0 PDGFA-203ENST00000402802 2305 ntAPPRIS P1 TSL 1 (best) BASIC18.43■□□□□ 0.54
NKX2-3Q8TAU0 MGRN1-201ENST00000262370 3968 ntAPPRIS P3 TSL 1 (best) BASIC18.43■□□□□ 0.54
NKX2-3Q8TAU0 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC18.43■□□□□ 0.54
NKX2-3Q8TAU0 AL136988.1-201ENST00000414640 1029 ntTSL 3 BASIC18.43■□□□□ 0.54
NKX2-3Q8TAU0 AC007731.4-201ENST00000420225 652 ntTSL 2 BASIC18.43■□□□□ 0.54
NKX2-3Q8TAU0 AC073133.1-201ENST00000426187 432 ntTSL 3 BASIC18.43■□□□□ 0.54
NKX2-3Q8TAU0 FAM21FP-201ENST00000426241 1131 ntBASIC18.43■□□□□ 0.54
NKX2-3Q8TAU0 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC18.43■□□□□ 0.54
NKX2-3Q8TAU0 TROAP-207ENST00000548311 623 ntAPPRIS ALT2 TSL 2 BASIC18.43■□□□□ 0.54
NKX2-3Q8TAU0 ACYP1-206ENST00000555694 565 ntAPPRIS P1 TSL 3 BASIC18.43■□□□□ 0.54
NKX2-3Q8TAU0 RORA-AS1-205ENST00000559824 761 ntTSL 3 BASIC18.43■□□□□ 0.54
NKX2-3Q8TAU0 AC007611.1-201ENST00000568150 826 ntTSL 2 BASIC18.43■□□□□ 0.54
NKX2-3Q8TAU0 LINC01887-202ENST00000584734 860 ntTSL 3 BASIC18.43■□□□□ 0.54
NKX2-3Q8TAU0 AC010319.3-201ENST00000597028 470 ntBASIC18.43■□□□□ 0.54
Retrieved 100 of 98,524 protein–RNA pairs in 69.2 ms