Protein–RNA interactions for Protein: Q8N3P4

VPS8, Vacuolar protein sorting-associated protein 8 homolog, humanhuman

Predictions only

Length 1,428 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS8Q8N3P4 AC145423.3-201ENST00000615987 467 ntBASIC24.16■■□□□ 1.46
VPS8Q8N3P4 SNUPN-206ENST00000564675 1682 ntAPPRIS P1 TSL 5 BASIC24.16■■□□□ 1.46
VPS8Q8N3P4 MBD4-204ENST00000503197 2099 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
VPS8Q8N3P4 MPPE1-201ENST00000309976 1636 ntTSL 1 (best) BASIC24.16■■□□□ 1.46
VPS8Q8N3P4 NKIRAS1-203ENST00000415901 1644 ntAPPRIS ALT1 TSL 5 BASIC24.16■■□□□ 1.46
VPS8Q8N3P4 AIFM3-203ENST00000405089 2333 ntAPPRIS ALT1 TSL 2 BASIC24.16■■□□□ 1.46
VPS8Q8N3P4 FLJ42969-201ENST00000514926 1948 ntTSL 2 BASIC24.16■■□□□ 1.46
VPS8Q8N3P4 PPP2R5D-206ENST00000472118 2963 ntAPPRIS ALT2 TSL 5 BASIC24.15■■□□□ 1.46
VPS8Q8N3P4 AC018755.2-201ENST00000599649 1837 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
VPS8Q8N3P4 STXBP5-207ENST00000546097 2160 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
VPS8Q8N3P4 SCGN-202ENST00000377961 1447 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
VPS8Q8N3P4 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC24.15■■□□□ 1.46
VPS8Q8N3P4 TIRAP-203ENST00000392680 2068 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
VPS8Q8N3P4 POLD3-208ENST00000532497 1700 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
VPS8Q8N3P4 PTPA-203ENST00000348141 2737 ntTSL 5 BASIC24.15■■□□□ 1.46
VPS8Q8N3P4 PTPA-207ENST00000393370 2737 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
VPS8Q8N3P4 ALDOA-201ENST00000338110 2384 ntAPPRIS P2 TSL 1 (best) BASIC24.15■■□□□ 1.46
VPS8Q8N3P4 SLC43A2-202ENST00000412517 1658 ntTSL 2 BASIC24.15■■□□□ 1.46
VPS8Q8N3P4 SP3-203ENST00000418194 3937 ntAPPRIS ALT2 TSL 1 (best) BASIC24.15■■□□□ 1.46
VPS8Q8N3P4 C20orf202-201ENST00000400633 1604 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
VPS8Q8N3P4 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC24.15■■□□□ 1.46
VPS8Q8N3P4 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
VPS8Q8N3P4 LEKR1-209ENST00000491763 1940 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
VPS8Q8N3P4 HDAC11-214ENST00000446613 2875 ntTSL 5 BASIC24.15■■□□□ 1.46
VPS8Q8N3P4 UCHL3-201ENST00000377595 844 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
VPS8Q8N3P4 MIR658-201ENST00000385210 100 ntBASIC24.15■■□□□ 1.46
VPS8Q8N3P4 SGK2-207ENST00000426287 1182 ntTSL 1 (best) BASIC24.15■■□□□ 1.46
VPS8Q8N3P4 RPL7P3-201ENST00000441388 714 ntBASIC24.15■■□□□ 1.46
VPS8Q8N3P4 KRT223P-202ENST00000449164 1292 ntBASIC24.15■■□□□ 1.46
VPS8Q8N3P4 CTBP2P5-201ENST00000454986 1264 ntBASIC24.15■■□□□ 1.46
VPS8Q8N3P4 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC24.15■■□□□ 1.46
VPS8Q8N3P4 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC24.15■■□□□ 1.46
VPS8Q8N3P4 DUX4L47-201ENST00000566374 394 ntBASIC24.15■■□□□ 1.46
VPS8Q8N3P4 TXNL4A-212ENST00000592957 546 ntTSL 3 BASIC24.15■■□□□ 1.46
VPS8Q8N3P4 DGAT2L6-201ENST00000333026 1553 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
VPS8Q8N3P4 SPHK2-202ENST00000340932 2492 ntTSL 5 BASIC24.15■■□□□ 1.46
VPS8Q8N3P4 RHOBTB1-201ENST00000337910 4473 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
VPS8Q8N3P4 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC24.15■■□□□ 1.46
VPS8Q8N3P4 AC023024.2-201ENST00000623561 1993 ntBASIC24.14■■□□□ 1.46
VPS8Q8N3P4 TARBP2-203ENST00000456234 1368 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
VPS8Q8N3P4 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
VPS8Q8N3P4 CISH-202ENST00000443053 2167 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
VPS8Q8N3P4 TRMO-203ENST00000375119 1647 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
VPS8Q8N3P4 NLE1-203ENST00000586869 5286 ntTSL 1 (best) BASIC24.14■■□□□ 1.46
VPS8Q8N3P4 MROH4P-201ENST00000431302 1578 ntBASIC24.14■■□□□ 1.46
VPS8Q8N3P4 TNPO2-201ENST00000356861 4962 ntAPPRIS ALT1 TSL 1 (best) BASIC24.14■■□□□ 1.46
VPS8Q8N3P4 SPAST-203ENST00000615843 5212 ntAPPRIS P4 TSL 1 (best) BASIC24.14■■□□□ 1.46
VPS8Q8N3P4 RANBP9-201ENST00000011619 3113 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.46
VPS8Q8N3P4 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
VPS8Q8N3P4 PSMB6-201ENST00000270586 852 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
VPS8Q8N3P4 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC24.14■■□□□ 1.45
VPS8Q8N3P4 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
VPS8Q8N3P4 AC115284.1-201ENST00000488257 547 ntTSL 4 BASIC24.14■■□□□ 1.45
VPS8Q8N3P4 AC007569.1-201ENST00000550306 600 ntTSL 3 BASIC24.14■■□□□ 1.45
VPS8Q8N3P4 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC24.14■■□□□ 1.45
VPS8Q8N3P4 PSMB6-205ENST00000614486 871 ntTSL 2 BASIC24.14■■□□□ 1.45
VPS8Q8N3P4 COX11-210ENST00000639671 696 ntBASIC24.14■■□□□ 1.45
VPS8Q8N3P4 NDUFV1-202ENST00000415352 1512 ntAPPRIS ALT1 TSL 2 BASIC24.14■■□□□ 1.45
VPS8Q8N3P4 MLPH-203ENST00000409373 2031 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
VPS8Q8N3P4 CDK11B-201ENST00000340677 2534 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
VPS8Q8N3P4 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
VPS8Q8N3P4 CDKN2AIP-203ENST00000504169 2721 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
VPS8Q8N3P4 KLC1-207ENST00000445352 2416 ntTSL 5 BASIC24.14■■□□□ 1.45
VPS8Q8N3P4 ADGRA2-201ENST00000315215 6270 ntTSL 1 (best) BASIC24.14■■□□□ 1.45
VPS8Q8N3P4 FOS-202ENST00000535987 1402 ntTSL 2 BASIC24.14■■□□□ 1.45
VPS8Q8N3P4 UBE2N-201ENST00000318066 5186 ntAPPRIS P1 TSL 1 (best) BASIC24.14■■□□□ 1.45
VPS8Q8N3P4 MGRN1-206ENST00000586183 1841 ntAPPRIS ALT2 TSL 5 BASIC24.13■■□□□ 1.45
VPS8Q8N3P4 ENDOV-213ENST00000520367 2680 ntTSL 2 BASIC24.13■■□□□ 1.45
VPS8Q8N3P4 TSKU-205ENST00000612930 2666 ntAPPRIS P1 TSL 4 BASIC24.13■■□□□ 1.45
VPS8Q8N3P4 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC24.13■■□□□ 1.45
VPS8Q8N3P4 SLC29A2-207ENST00000619145 2380 ntTSL 5 BASIC24.13■■□□□ 1.45
VPS8Q8N3P4 MUC20-201ENST00000320736 1916 ntAPPRIS ALT2 TSL 5 BASIC24.13■■□□□ 1.45
VPS8Q8N3P4 PITX2-205ENST00000394598 1906 ntAPPRIS ALT1 TSL 1 (best) BASIC24.13■■□□□ 1.45
VPS8Q8N3P4 ACTL6A-202ENST00000429709 1901 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
VPS8Q8N3P4 C17orf51-202ENST00000412778 877 ntAPPRIS ALT2 TSL 3 BASIC24.13■■□□□ 1.45
VPS8Q8N3P4 AC099336.1-201ENST00000417053 1171 ntBASIC24.13■■□□□ 1.45
VPS8Q8N3P4 AL450998.2-201ENST00000418525 639 ntTSL 3 BASIC24.13■■□□□ 1.45
VPS8Q8N3P4 DICER1-AS1-202ENST00000439819 810 ntTSL 3 BASIC24.13■■□□□ 1.45
VPS8Q8N3P4 AC114812.1-204ENST00000449669 728 ntBASIC24.13■■□□□ 1.45
VPS8Q8N3P4 AL157834.2-201ENST00000451737 663 ntTSL 1 (best) BASIC24.13■■□□□ 1.45
VPS8Q8N3P4 AC104989.1-201ENST00000519711 778 ntBASIC24.13■■□□□ 1.45
VPS8Q8N3P4 CHCHD7-211ENST00000521831 573 ntTSL 2 BASIC24.13■■□□□ 1.45
VPS8Q8N3P4 AC136475.5-202ENST00000524824 587 ntTSL 4 BASIC24.13■■□□□ 1.45
VPS8Q8N3P4 VASH1-AS1-201ENST00000554058 871 ntTSL 3 BASIC24.13■■□□□ 1.45
VPS8Q8N3P4 AP000439.4-201ENST00000567742 664 ntTSL 3 BASIC24.13■■□□□ 1.45
VPS8Q8N3P4 BTBD10-208ENST00000528120 1662 ntTSL 2 BASIC24.13■■□□□ 1.45
VPS8Q8N3P4 ANKRD42-208ENST00000531895 1887 ntAPPRIS ALT2 TSL 1 (best) BASIC24.13■■□□□ 1.45
VPS8Q8N3P4 PRPSAP2-216ENST00000536323 1872 ntTSL 2 BASIC24.13■■□□□ 1.45
VPS8Q8N3P4 RILPL2-201ENST00000280571 6141 ntAPPRIS P1 TSL 1 (best) BASIC24.13■■□□□ 1.45
VPS8Q8N3P4 RNF157-201ENST00000269391 4955 ntAPPRIS P3 TSL 1 (best) BASIC24.13■■□□□ 1.45
VPS8Q8N3P4 PRSS50-201ENST00000460241 2960 ntAPPRIS P1 TSL 2 BASIC24.13■■□□□ 1.45
VPS8Q8N3P4 TBC1D1-219ENST00000615497 2383 ntTSL 2 BASIC24.13■■□□□ 1.45
VPS8Q8N3P4 AL157414.3-201ENST00000624276 1954 ntBASIC24.13■■□□□ 1.45
VPS8Q8N3P4 HSD17B6-201ENST00000322165 1512 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
VPS8Q8N3P4 AURKC-203ENST00000448930 1318 ntAPPRIS ALT2 TSL 5 BASIC24.12■■□□□ 1.45
VPS8Q8N3P4 INTS14-204ENST00000442903 1863 ntTSL 2 BASIC24.12■■□□□ 1.45
VPS8Q8N3P4 FAM32A-201ENST00000263384 1455 ntAPPRIS P1 TSL 1 (best) BASIC24.12■■□□□ 1.45
VPS8Q8N3P4 AP003385.5-201ENST00000533876 555 ntTSL 4 BASIC24.12■■□□□ 1.45
VPS8Q8N3P4 AP000808.2-201ENST00000542410 569 ntTSL 4 BASIC24.12■■□□□ 1.45
VPS8Q8N3P4 LINC02299-201ENST00000556669 430 ntTSL 5 BASIC24.12■■□□□ 1.45
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms