Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 MYL12B-201ENST00000237500 1210 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP3Q7Z494 MRPS22-201ENST00000310776 1120 ntAPPRIS P2 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP3Q7Z494 KLHL22-201ENST00000328879 2616 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP3Q7Z494 MBD3L5-201ENST00000329753 778 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP3Q7Z494 RAB36-202ENST00000341989 936 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP3Q7Z494 AC004899.1-201ENST00000424687 1714 ntBASIC20.94■□□□□ 0.94
NPHP3Q7Z494 C9orf116-205ENST00000429260 678 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP3Q7Z494 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC20.94■□□□□ 0.94
NPHP3Q7Z494 AL157935.2-201ENST00000476274 1071 ntTSL 5 BASIC20.94■□□□□ 0.94
NPHP3Q7Z494 AC125604.1-201ENST00000496255 707 ntBASIC20.94■□□□□ 0.94
NPHP3Q7Z494 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC20.94■□□□□ 0.94
NPHP3Q7Z494 SAXO2-207ENST00000566861 404 ntAPPRIS ALT2 TSL 2 BASIC20.94■□□□□ 0.94
NPHP3Q7Z494 AC068587.8-201ENST00000641239 219 ntBASIC20.94■□□□□ 0.94
NPHP3Q7Z494 CLDN11-201ENST00000064724 2169 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP3Q7Z494 ONECUT1-201ENST00000305901 2092 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP3Q7Z494 MSI2-206ENST00000579180 1635 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP3Q7Z494 DOK5-202ENST00000395939 1453 ntTSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP3Q7Z494 RGS14-201ENST00000408923 2415 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP3Q7Z494 TRNT1-201ENST00000251607 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.94■□□□□ 0.94
NPHP3Q7Z494 FAN1-207ENST00000565466 2304 ntTSL 2 BASIC20.93■□□□□ 0.94
NPHP3Q7Z494 AL359915.2-205ENST00000418015 1529 ntTSL 2 BASIC20.93■□□□□ 0.94
NPHP3Q7Z494 FAM49B-201ENST00000401979 2024 ntAPPRIS P1 TSL 2 BASIC20.93■□□□□ 0.94
NPHP3Q7Z494 KDM1A-201ENST00000356634 3033 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP3Q7Z494 LGI4-202ENST00000392225 2891 ntTSL 5 BASIC20.93■□□□□ 0.94
NPHP3Q7Z494 SDCBP-202ENST00000413219 2086 ntAPPRIS P3 TSL 2 BASIC20.93■□□□□ 0.94
NPHP3Q7Z494 PIGC-201ENST00000344529 1447 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP3Q7Z494 GAL-201ENST00000265643 818 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP3Q7Z494 FZR1-201ENST00000313639 1215 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP3Q7Z494 ANK1-203ENST00000314214 1185 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP3Q7Z494 NOC2LP1-201ENST00000450578 752 ntBASIC20.93■□□□□ 0.94
NPHP3Q7Z494 PFN2-205ENST00000461868 613 ntTSL 2 BASIC20.93■□□□□ 0.94
NPHP3Q7Z494 RN7SL181P-201ENST00000462921 277 ntBASIC20.93■□□□□ 0.94
NPHP3Q7Z494 AC116345.2-201ENST00000512837 523 ntBASIC20.93■□□□□ 0.94
NPHP3Q7Z494 AC022616.1-201ENST00000518688 554 ntBASIC20.93■□□□□ 0.94
NPHP3Q7Z494 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP3Q7Z494 PGAM1P5-201ENST00000548011 764 ntBASIC20.93■□□□□ 0.94
NPHP3Q7Z494 NPM1P43-201ENST00000558669 786 ntBASIC20.93■□□□□ 0.94
NPHP3Q7Z494 TPGS2-209ENST00000589049 1102 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP3Q7Z494 AC092506.1-204ENST00000634888 1066 ntTSL 5 BASIC20.93■□□□□ 0.94
NPHP3Q7Z494 VSIG10L2-202ENST00000638636 2304 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
NPHP3Q7Z494 PLCB2-202ENST00000456256 4242 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP3Q7Z494 TMBIM1-201ENST00000258412 2371 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
NPHP3Q7Z494 AL157791.1-201ENST00000553667 1699 ntBASIC20.93■□□□□ 0.94
NPHP3Q7Z494 EEFSEC-202ENST00000483457 1859 ntTSL 5 BASIC20.93■□□□□ 0.94
NPHP3Q7Z494 SMARCA4-203ENST00000429416 5691 ntTSL 2 BASIC20.93■□□□□ 0.94
NPHP3Q7Z494 LCORL-203ENST00000382226 5009 ntAPPRIS P2 TSL 5 BASIC20.92■□□□□ 0.94
NPHP3Q7Z494 COL9A1-204ENST00000370496 1372 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP3Q7Z494 MBD1-210ENST00000457839 2473 ntAPPRIS ALT2 TSL 2 BASIC20.92■□□□□ 0.94
NPHP3Q7Z494 TSG101-204ENST00000536719 2101 ntTSL 5 BASIC20.92■□□□□ 0.94
NPHP3Q7Z494 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP3Q7Z494 TNXB-204ENST00000479795 2742 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP3Q7Z494 PRG2-201ENST00000311862 1424 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP3Q7Z494 PCSK5-201ENST00000376752 5756 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP3Q7Z494 SKOR1-203ENST00000554054 3620 ntAPPRIS ALT2 TSL 5 BASIC20.92■□□□□ 0.94
NPHP3Q7Z494 CAPZB-201ENST00000264202 858 ntAPPRIS P3 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP3Q7Z494 CST9L-201ENST00000376979 959 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP3Q7Z494 AC026316.1-201ENST00000398900 414 ntBASIC20.92■□□□□ 0.94
NPHP3Q7Z494 AP1S3-204ENST00000409375 552 ntTSL 3 BASIC20.92■□□□□ 0.94
NPHP3Q7Z494 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC20.92■□□□□ 0.94
NPHP3Q7Z494 PDIA3P2-201ENST00000428073 158 ntBASIC20.92■□□□□ 0.94
NPHP3Q7Z494 AL035588.1-201ENST00000438967 408 ntTSL 3 BASIC20.92■□□□□ 0.94
NPHP3Q7Z494 AC104073.2-201ENST00000453737 312 ntBASIC20.92■□□□□ 0.94
NPHP3Q7Z494 AC005324.6-201ENST00000587972 613 ntBASIC20.92■□□□□ 0.94
NPHP3Q7Z494 AC006453.1-201ENST00000636037 1257 ntBASIC20.92■□□□□ 0.94
NPHP3Q7Z494 AC022188.1-201ENST00000620960 1664 ntBASIC20.92■□□□□ 0.94
NPHP3Q7Z494 OSBPL1A-203ENST00000399441 1887 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP3Q7Z494 AC106886.4-201ENST00000623557 2502 ntBASIC20.92■□□□□ 0.94
NPHP3Q7Z494 WWTR1-201ENST00000360632 2103 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
NPHP3Q7Z494 SLC22A11-203ENST00000377585 2124 ntTSL 2 BASIC20.92■□□□□ 0.94
NPHP3Q7Z494 GRHPR-212ENST00000607784 1704 ntTSL 5 BASIC20.92■□□□□ 0.94
NPHP3Q7Z494 SACS-AS1-201ENST00000443092 2234 ntTSL 2 BASIC20.92■□□□□ 0.94
NPHP3Q7Z494 HOXB1-201ENST00000239174 2020 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP3Q7Z494 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC20.91■□□□□ 0.94
NPHP3Q7Z494 ADAM6-201ENST00000606026 1843 ntTSL 2 BASIC20.91■□□□□ 0.94
NPHP3Q7Z494 CTNNAL1-201ENST00000325551 2490 ntAPPRIS P3 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP3Q7Z494 LSR-212ENST00000602122 2480 ntAPPRIS ALT2 TSL 2 BASIC20.91■□□□□ 0.94
NPHP3Q7Z494 WASH3P-204ENST00000558784 1644 ntTSL 5 BASIC20.91■□□□□ 0.94
NPHP3Q7Z494 ZNF7-218ENST00000544249 2125 ntTSL 2 BASIC20.91■□□□□ 0.94
NPHP3Q7Z494 NSD3-201ENST00000316985 3995 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP3Q7Z494 RNASE10-201ENST00000328444 717 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
NPHP3Q7Z494 CELA2B-201ENST00000375910 923 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP3Q7Z494 FGFR3P1-201ENST00000449999 601 ntBASIC20.91■□□□□ 0.94
NPHP3Q7Z494 RN7SL818P-201ENST00000485099 259 ntBASIC20.91■□□□□ 0.94
NPHP3Q7Z494 PMP22-206ENST00000494511 872 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP3Q7Z494 RBM4B-202ENST00000524637 867 ntTSL 5 BASIC20.91■□□□□ 0.94
NPHP3Q7Z494 AP001547.1-201ENST00000527440 374 ntTSL 3 BASIC20.91■□□□□ 0.94
NPHP3Q7Z494 CUEDC1-207ENST00000577840 875 ntTSL 5 BASIC20.91■□□□□ 0.94
NPHP3Q7Z494 RN7SL725P-201ENST00000606439 259 ntBASIC20.91■□□□□ 0.94
NPHP3Q7Z494 CCDC197-205ENST00000636493 1279 ntAPPRIS P5 TSL 5 BASIC20.91■□□□□ 0.94
NPHP3Q7Z494 SEPT2-245ENST00000616972 3446 ntTSL 2 BASIC20.91■□□□□ 0.94
NPHP3Q7Z494 FAM234A-203ENST00000399932 3213 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP3Q7Z494 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP3Q7Z494 BATF2-201ENST00000301887 2142 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP3Q7Z494 CLCNKB-201ENST00000375667 2129 ntTSL 2 BASIC20.91■□□□□ 0.94
NPHP3Q7Z494 SFTPB-202ENST00000409383 1867 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP3Q7Z494 INPP4A-205ENST00000409851 3365 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP3Q7Z494 FAM222B-211ENST00000582266 2613 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
NPHP3Q7Z494 AP000787.1-201ENST00000501356 1926 ntTSL 2 BASIC20.9■□□□□ 0.94
NPHP3Q7Z494 ANKRD6-202ENST00000369408 5258 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
NPHP3Q7Z494 LDB3-208ENST00000623007 1664 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
Retrieved 100 of 98,524 protein–RNA pairs in 51.4 ms