Protein–RNA interactions for Protein: Q70EL4

USP43, Ubiquitin carboxyl-terminal hydrolase 43, humanhuman

Predictions only

Length 1,123 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP43Q70EL4 FLNA-207ENST00000422373 8486 ntAPPRIS P3 TSL 5 BASIC14.41□□□□□ -0.1
USP43Q70EL4 AC148477.4-201ENST00000613430 1793 ntBASIC14.41□□□□□ -0.1
USP43Q70EL4 DOK3-203ENST00000377112 1884 ntTSL 2 BASIC14.41□□□□□ -0.1
USP43Q70EL4 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
USP43Q70EL4 SLC34A2-203ENST00000504570 2162 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP43Q70EL4 LINC01271-201ENST00000441214 2250 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
USP43Q70EL4 AL390038.1-201ENST00000419814 2481 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
USP43Q70EL4 AL359258.1-201ENST00000438965 2481 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
USP43Q70EL4 AC092384.2-204ENST00000565053 2566 ntTSL 2 BASIC14.41□□□□□ -0.1
USP43Q70EL4 CFAP65-203ENST00000409865 2769 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
USP43Q70EL4 COL9A2-202ENST00000372748 2862 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP43Q70EL4 PARP10-201ENST00000313028 3497 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP43Q70EL4 C16orf52-202ENST00000542527 4360 ntAPPRIS P1 TSL 5 BASIC14.41□□□□□ -0.1
USP43Q70EL4 YTHDF3-216ENST00000623280 5193 ntTSL 1 (best) BASIC14.41□□□□□ -0.1
USP43Q70EL4 TSC2-203ENST00000382538 5264 ntAPPRIS ALT2 TSL 2 BASIC14.41□□□□□ -0.1
USP43Q70EL4 MEF2D-201ENST00000348159 5965 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP43Q70EL4 ZFYVE28-201ENST00000290974 4131 ntAPPRIS P3 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP43Q70EL4 FLI1-205ENST00000527786 4127 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP43Q70EL4 CHN2-201ENST00000222792 3530 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP43Q70EL4 C21orf58-204ENST00000397682 2941 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP43Q70EL4 PPFIBP1-216ENST00000545334 2805 ntTSL 2 BASIC14.41□□□□□ -0.1
USP43Q70EL4 AC118758.2-201ENST00000614242 2813 ntBASIC14.41□□□□□ -0.1
USP43Q70EL4 CA12-202ENST00000344366 2744 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP43Q70EL4 RSPH9-201ENST00000372163 2534 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP43Q70EL4 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP43Q70EL4 UBXN11-206ENST00000374222 2043 ntAPPRIS P4 TSL 5 BASIC14.41□□□□□ -0.1
USP43Q70EL4 AC004223.3-201ENST00000593039 1638 ntAPPRIS P5 TSL 2 BASIC14.41□□□□□ -0.1
USP43Q70EL4 SEPT4-201ENST00000317256 1530 ntAPPRIS ALT2 TSL 1 (best) BASIC14.41□□□□□ -0.1
USP43Q70EL4 AC126365.1-201ENST00000578585 1514 ntBASIC14.41□□□□□ -0.1
USP43Q70EL4 RNF182-208ENST00000544682 3495 ntAPPRIS P1 TSL 4 BASIC14.4□□□□□ -0.1
USP43Q70EL4 ERN2-202ENST00000457008 3169 ntAPPRIS ALT2 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP43Q70EL4 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
USP43Q70EL4 SCAP-206ENST00000428413 3749 ntTSL 5 BASIC14.4□□□□□ -0.1
USP43Q70EL4 CLEC18A-202ENST00000393701 1955 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP43Q70EL4 U82695.1-201ENST00000635752 1889 ntBASIC14.4□□□□□ -0.1
USP43Q70EL4 RSPH6A-203ENST00000600188 1751 ntAPPRIS ALT2 TSL 2 BASIC14.4□□□□□ -0.1
USP43Q70EL4 EVA1C-202ENST00000382699 1668 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP43Q70EL4 ESRP2-202ENST00000473183 3793 ntAPPRIS P2 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP43Q70EL4 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC14.4□□□□□ -0.1
USP43Q70EL4 GRIK4-208ENST00000638419 3593 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
USP43Q70EL4 DDX50-206ENST00000610822 2510 ntTSL 5 BASIC14.4□□□□□ -0.1
USP43Q70EL4 AC092127.1-201ENST00000567093 3455 ntBASIC14.4□□□□□ -0.1
USP43Q70EL4 FOXP3-206ENST00000557224 1371 ntTSL 2 BASIC14.4□□□□□ -0.1
USP43Q70EL4 SOAT1-203ENST00000539888 6794 ntTSL 2 BASIC14.4□□□□□ -0.1
USP43Q70EL4 LHFPL4-201ENST00000287585 4880 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP43Q70EL4 ITSN1-212ENST00000399367 5722 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP43Q70EL4 ZNF81-201ENST00000334937 610 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
USP43Q70EL4 VSTM1-201ENST00000338372 1023 ntAPPRIS P3 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP43Q70EL4 ROMO1-203ENST00000374077 422 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP43Q70EL4 RPSAP43-201ENST00000402237 625 ntBASIC14.4□□□□□ -0.1
USP43Q70EL4 CENPM-203ENST00000402338 1002 ntTSL 2 BASIC14.4□□□□□ -0.1
USP43Q70EL4 GGT1-207ENST00000404532 853 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
USP43Q70EL4 ESR1-204ENST00000406599 1251 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
USP43Q70EL4 HAUS4P1-201ENST00000406739 1145 ntBASIC14.4□□□□□ -0.1
USP43Q70EL4 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC14.4□□□□□ -0.1
USP43Q70EL4 C21orf33-205ENST00000427803 1077 ntTSL 2 BASIC14.4□□□□□ -0.1
USP43Q70EL4 GPX1P2-201ENST00000429271 606 ntBASIC14.4□□□□□ -0.1
USP43Q70EL4 S100A2-206ENST00000497140 697 ntTSL 2 BASIC14.4□□□□□ -0.1
USP43Q70EL4 RNA5SP416-201ENST00000516838 111 ntBASIC14.4□□□□□ -0.1
USP43Q70EL4 RNA5SP415-201ENST00000517246 115 ntBASIC14.4□□□□□ -0.1
USP43Q70EL4 NT5C3B-215ENST00000521789 993 ntTSL 3 BASIC14.4□□□□□ -0.1
USP43Q70EL4 SPCS2-202ENST00000526361 772 ntTSL 2 BASIC14.4□□□□□ -0.1
USP43Q70EL4 FLJ20021-201ENST00000527564 790 ntTSL 2 BASIC14.4□□□□□ -0.1
USP43Q70EL4 EEF1D-238ENST00000531621 840 ntTSL 3 BASIC14.4□□□□□ -0.1
USP43Q70EL4 KIRREL3-AS1-201ENST00000548204 586 ntTSL 3 BASIC14.4□□□□□ -0.1
USP43Q70EL4 AC091167.2-201ENST00000579581 588 ntBASIC14.4□□□□□ -0.1
USP43Q70EL4 SELENOM-210ENST00000611680 689 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
USP43Q70EL4 OPN5-206ENST00000638973 1090 ntTSL 5 BASIC14.4□□□□□ -0.1
USP43Q70EL4 UBC-205ENST00000536769 3745 ntAPPRIS P1 BASIC14.4□□□□□ -0.1
USP43Q70EL4 STEAP2-202ENST00000394621 7033 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP43Q70EL4 MYH7-201ENST00000355349 6087 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP43Q70EL4 MAN1B1-202ENST00000371589 2769 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP43Q70EL4 AC011477.6-201ENST00000604980 1927 ntBASIC14.4□□□□□ -0.1
USP43Q70EL4 ATP5B-201ENST00000262030 1839 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP43Q70EL4 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC14.4□□□□□ -0.1
USP43Q70EL4 C1QTNF1-204ENST00000392445 2833 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
USP43Q70EL4 GORAB-202ENST00000367763 2189 ntAPPRIS P1 TSL 2 BASIC14.4□□□□□ -0.1
USP43Q70EL4 WDR59-201ENST00000262144 5898 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
USP43Q70EL4 CSRNP2-201ENST00000228515 4471 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP43Q70EL4 DHCR7-202ENST00000407721 2601 ntAPPRIS P1 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP43Q70EL4 SFXN3-202ENST00000393459 3098 ntAPPRIS P1 TSL 5 BASIC14.4□□□□□ -0.1
USP43Q70EL4 HSP90B1-210ENST00000614327 1338 ntTSL 1 (best) BASIC14.4□□□□□ -0.1
USP43Q70EL4 HNRNPDL-210ENST00000630827 1318 ntAPPRIS ALT2 TSL 5 BASIC14.4□□□□□ -0.1
USP43Q70EL4 NFKB2-204ENST00000428099 3416 ntAPPRIS ALT1 TSL 1 (best) BASIC14.4□□□□□ -0.1
USP43Q70EL4 KIF1A-201ENST00000320389 8832 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
USP43Q70EL4 RPN1-207ENST00000497289 2137 ntTSL 2 BASIC14.39□□□□□ -0.11
USP43Q70EL4 NATD1-201ENST00000611551 4931 ntAPPRIS P1 TSL 1 (best) BASIC14.39□□□□□ -0.11
USP43Q70EL4 SNPH-203ENST00000614659 5354 ntAPPRIS ALT2 TSL 1 (best) BASIC14.39□□□□□ -0.11
USP43Q70EL4 GCLM-204ENST00000615724 3008 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
USP43Q70EL4 EGR3-204ENST00000522910 1553 ntAPPRIS ALT1 TSL 2 BASIC14.39□□□□□ -0.11
USP43Q70EL4 AKAP1-201ENST00000314126 2380 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
USP43Q70EL4 AC079447.1-201ENST00000424491 1947 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
USP43Q70EL4 FBXO3-203ENST00000526785 5798 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
USP43Q70EL4 CCDC130-204ENST00000586600 1922 ntAPPRIS P1 TSL 5 BASIC14.39□□□□□ -0.11
USP43Q70EL4 LARP4-219ENST00000614335 1949 ntTSL 5 BASIC14.39□□□□□ -0.11
USP43Q70EL4 BABAM1-201ENST00000359435 1472 ntAPPRIS P3 TSL 1 (best) BASIC14.39□□□□□ -0.11
USP43Q70EL4 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC14.39□□□□□ -0.11
USP43Q70EL4 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC14.39□□□□□ -0.11
USP43Q70EL4 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC14.39□□□□□ -0.11
USP43Q70EL4 KRT8P44-201ENST00000441609 1350 ntBASIC14.39□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 101.5 ms