Protein–RNA interactions for Protein: Q5VTR2

RNF20, E3 ubiquitin-protein ligase BRE1A, humanhuman

Predictions only

Length 975 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RNF20Q5VTR2 TMTC1-206ENST00000551659 4228 ntAPPRIS ALT2 TSL 5 BASIC18.78■□□□□ 0.6
RNF20Q5VTR2 THOC5-203ENST00000397872 2676 ntAPPRIS P1 TSL 5 BASIC18.78■□□□□ 0.6
RNF20Q5VTR2 C18orf15-201ENST00000623680 2534 ntBASIC18.78■□□□□ 0.6
RNF20Q5VTR2 WIZ-206ENST00000599686 3644 ntTSL 5 BASIC18.78■□□□□ 0.6
RNF20Q5VTR2 POP4-201ENST00000221770 2321 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RNF20Q5VTR2 ZNF767P-201ENST00000463567 3520 ntTSL 2 BASIC18.78■□□□□ 0.6
RNF20Q5VTR2 AC023024.1-201ENST00000558838 2590 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RNF20Q5VTR2 Z97205.2-201ENST00000564697 1639 ntBASIC18.78■□□□□ 0.6
RNF20Q5VTR2 ZNF76-202ENST00000339411 2447 ntTSL 1 (best) BASIC18.78■□□□□ 0.6
RNF20Q5VTR2 AKTIP-202ENST00000394657 2426 ntAPPRIS P3 TSL 2 BASIC18.78■□□□□ 0.6
RNF20Q5VTR2 AL139423.1-201ENST00000606802 7923 ntTSL 5 BASIC18.78■□□□□ 0.6
RNF20Q5VTR2 CDIP1-206ENST00000563507 1463 ntTSL 2 BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 HEY1-201ENST00000337919 2296 ntAPPRIS ALT1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 AFTPH-201ENST00000238855 4113 ntAPPRIS ALT1 TSL 5 BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 GLYCTK-207ENST00000477382 1304 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 PPP1R37-201ENST00000221462 3163 ntAPPRIS P1 TSL 5 BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 AC138035.3-201ENST00000622706 2791 ntBASIC18.77■□□□□ 0.6
RNF20Q5VTR2 USP43-201ENST00000285199 4169 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 PNLDC1-202ENST00000392167 1816 ntAPPRIS P1 TSL 2 BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 CNPPD1-202ENST00000409789 2073 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 TMEM161A-206ENST00000587583 1654 ntTSL 5 BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 PCDHA4-203ENST00000530339 5251 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 AC006486.2-201ENST00000624246 2199 ntBASIC18.77■□□□□ 0.6
RNF20Q5VTR2 TECR-201ENST00000215567 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 PDCD2L-201ENST00000246535 1171 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 ZNF524-201ENST00000301073 1102 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 LYPLAL1-AS1-201ENST00000441331 724 ntTSL 3 BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 AL109811.2-201ENST00000447600 487 ntTSL 3 BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 AC091133.3-201ENST00000504865 432 ntTSL 5 BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 SLC1A4-205ENST00000531327 1217 ntTSL 2 BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 AC008750.1-201ENST00000532473 492 ntTSL 3 BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 AC138207.8-201ENST00000579692 739 ntTSL 3 BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 ARMC7-205ENST00000584947 445 ntTSL 3 BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 AL022328.4-201ENST00000608025 1001 ntTSL 2 BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 AC139530.3-201ENST00000620344 690 ntBASIC18.77■□□□□ 0.6
RNF20Q5VTR2 HOTAIRM1_1.1-201ENST00000622675 125 ntBASIC18.77■□□□□ 0.6
RNF20Q5VTR2 BSG-204ENST00000545507 1795 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 AL162457.1-201ENST00000317652 2000 ntTSL 2 BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 PBX3-204ENST00000373489 2775 ntAPPRIS P3 TSL 1 (best) BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 ZFAND5-205ENST00000376962 2785 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 CDK18-201ENST00000360066 3141 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 SEC14L4-204ENST00000381982 1603 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 CNOT8-202ENST00000403027 2604 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 AL355493.2-201ENST00000568270 1395 ntTSL 1 (best) BASIC18.77■□□□□ 0.6
RNF20Q5VTR2 XKR7-201ENST00000562532 7844 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
RNF20Q5VTR2 ROBO3-201ENST00000397801 4569 ntAPPRIS P2 TSL 1 (best) BASIC18.77■□□□□ 0.59
RNF20Q5VTR2 ROBO3-220ENST00000538940 4551 ntAPPRIS ALT2 TSL 5 BASIC18.77■□□□□ 0.59
RNF20Q5VTR2 NIPAL3-204ENST00000374399 1711 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
RNF20Q5VTR2 LSS-202ENST00000397728 4936 ntAPPRIS P1 TSL 1 (best) BASIC18.77■□□□□ 0.59
RNF20Q5VTR2 SRGAP2C-201ENST00000304465 1477 ntTSL 5 BASIC18.77■□□□□ 0.59
RNF20Q5VTR2 SRGAP2-201ENST00000419187 1477 ntTSL 5 BASIC18.77■□□□□ 0.59
RNF20Q5VTR2 SRGAP2B-205ENST00000619678 1477 ntTSL 5 BASIC18.77■□□□□ 0.59
RNF20Q5VTR2 GCLC-213ENST00000616923 3694 ntTSL 1 (best) BASIC18.77■□□□□ 0.59
RNF20Q5VTR2 AC104407.1-201ENST00000511017 1568 ntTSL 3 BASIC18.76■□□□□ 0.59
RNF20Q5VTR2 ITSN1-205ENST00000381291 5437 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RNF20Q5VTR2 POLI-208ENST00000579534 6133 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF20Q5VTR2 NOX5-204ENST00000455873 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF20Q5VTR2 SUPT20H-201ENST00000350612 2739 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF20Q5VTR2 CHRD-201ENST00000204604 3521 ntAPPRIS P3 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF20Q5VTR2 TSC22D3-201ENST00000315660 2213 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RNF20Q5VTR2 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC18.76■□□□□ 0.59
RNF20Q5VTR2 USP40-206ENST00000443711 628 ntTSL 2 BASIC18.76■□□□□ 0.59
RNF20Q5VTR2 RN7SL618P-201ENST00000477850 296 ntBASIC18.76■□□□□ 0.59
RNF20Q5VTR2 MLF1-210ENST00000484955 1247 ntTSL 1 (best) BASIC18.76■□□□□ 0.59
RNF20Q5VTR2 SLED1-202ENST00000512051 380 ntBASIC18.76■□□□□ 0.59
RNF20Q5VTR2 TMEM120B-206ENST00000540377 962 ntTSL 3 BASIC18.76■□□□□ 0.59
RNF20Q5VTR2 MAPKAPK5-203ENST00000547305 494 ntTSL 2 BASIC18.76■□□□□ 0.59
RNF20Q5VTR2 AL928654.4-206ENST00000551180 980 ntAPPRIS ALT2 TSL 5 BASIC18.76■□□□□ 0.59
RNF20Q5VTR2 AC108449.3-201ENST00000560714 585 ntTSL 3 BASIC18.76■□□□□ 0.59
RNF20Q5VTR2 FSTL3-202ENST00000588773 746 ntTSL 2 BASIC18.76■□□□□ 0.59
RNF20Q5VTR2 AC025048.3-201ENST00000590609 569 ntBASIC18.76■□□□□ 0.59
RNF20Q5VTR2 AC005702.4-201ENST00000618393 416 ntBASIC18.76■□□□□ 0.59
RNF20Q5VTR2 AC105277.1-203ENST00000635492 1293 ntTSL 5 BASIC18.76■□□□□ 0.59
RNF20Q5VTR2 RUSC1-205ENST00000368354 3114 ntTSL 2 BASIC18.76■□□□□ 0.59
RNF20Q5VTR2 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC18.76■□□□□ 0.59
RNF20Q5VTR2 PEPD-201ENST00000244137 1910 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF20Q5VTR2 PAQR8-202ENST00000442253 4738 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF20Q5VTR2 DGKZ-205ENST00000456247 3482 ntAPPRIS ALT2 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF20Q5VTR2 PPOX-201ENST00000352210 1686 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF20Q5VTR2 PRKAG3-206ENST00000529249 2222 ntAPPRIS P1 TSL 1 (best) BASIC18.76■□□□□ 0.59
RNF20Q5VTR2 AL034550.2-201ENST00000620523 1771 ntTSL 2 BASIC18.76■□□□□ 0.59
RNF20Q5VTR2 SLCO5A1-201ENST00000260126 9076 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF20Q5VTR2 CD68-201ENST00000250092 1878 ntAPPRIS P3 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF20Q5VTR2 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF20Q5VTR2 LFNG-202ENST00000338732 1968 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RNF20Q5VTR2 DTD2-202ENST00000356180 1400 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF20Q5VTR2 RHOT1-203ENST00000358365 3297 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RNF20Q5VTR2 ELF2-201ENST00000358635 3036 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RNF20Q5VTR2 GRB2-202ENST00000316804 3248 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF20Q5VTR2 FUT7-201ENST00000314412 2584 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF20Q5VTR2 FAM198B-203ENST00000585682 4900 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
RNF20Q5VTR2 AC144831.1-201ENST00000573312 2656 ntBASIC18.75■□□□□ 0.59
RNF20Q5VTR2 DIS3-202ENST00000377780 5232 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RNF20Q5VTR2 ARHGAP39-201ENST00000276826 4697 ntAPPRIS ALT2 TSL 2 BASIC18.75■□□□□ 0.59
RNF20Q5VTR2 AC124057.1-201ENST00000433035 404 ntTSL 5 BASIC18.75■□□□□ 0.59
RNF20Q5VTR2 SNX21-206ENST00000462307 1043 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RNF20Q5VTR2 UBA5-213ENST00000494238 2997 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
RNF20Q5VTR2 LY6E-204ENST00000519546 971 ntTSL 2 BASIC18.75■□□□□ 0.59
Retrieved 100 of 98,524 protein–RNA pairs in 38.1 ms