Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 PIK3R5-216ENST00000584803 2653 ntAPPRIS ALT1 TSL 5 BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 TBRG4-201ENST00000258770 2243 ntAPPRIS P1 TSL 1 (best) BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 AC073439.1-201ENST00000624121 1774 ntBASIC14.14□□□□□ -0.15
CCDC58Q4VC31 PCDHA3-202ENST00000532566 4594 ntBASIC14.14□□□□□ -0.15
CCDC58Q4VC31 COL25A1-203ENST00000399132 2724 ntAPPRIS P4 TSL 5 BASIC14.14□□□□□ -0.15
CCDC58Q4VC31 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 RPS6KA4-202ENST00000528057 3121 ntAPPRIS ALT1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 OFD1-202ENST00000380550 3296 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 XG-201ENST00000381174 2315 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 ADD2-208ENST00000430656 2332 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 OTULIN-201ENST00000284274 7800 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 CLDN6-201ENST00000328796 1369 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 TMA16-201ENST00000358572 1978 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 FAM192A-201ENST00000309137 2848 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 ILDR1-202ENST00000344209 2226 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 SYP-201ENST00000263233 2498 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 GUCA1B-201ENST00000230361 1113 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 PLK2-201ENST00000274289 2960 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 CCDC12-201ENST00000292314 1017 ntTSL 5 BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 GPRC5C-201ENST00000342648 1273 ntTSL 5 BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 CD1E-203ENST00000368156 861 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 NME2-201ENST00000393183 568 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 SLC4A1APP2-201ENST00000424054 1259 ntBASIC14.13□□□□□ -0.15
CCDC58Q4VC31 AC092474.2-201ENST00000424288 719 ntBASIC14.13□□□□□ -0.15
CCDC58Q4VC31 FTCD-AS1-201ENST00000446649 500 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 KRTCAP3-207ENST00000543753 956 ntAPPRIS P1 TSL 5 BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 RPL28-209ENST00000560055 670 ntTSL 3 BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 SAXO2-206ENST00000566205 340 ntAPPRIS ALT2 TSL 2 BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 PRELID1P1-202ENST00000567272 903 ntBASIC14.13□□□□□ -0.15
CCDC58Q4VC31 AC087741.1-203ENST00000576824 820 ntTSL 3 BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 PRR29-207ENST00000580752 458 ntTSL 3 BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 TBCB-205ENST00000585746 875 ntTSL 3 BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 AC005625.1-201ENST00000590304 472 ntTSL 3 BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 BCL2L12-206ENST00000598306 510 ntTSL 5 BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 FHL2-212ENST00000607522 759 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 TP73-AS1-207ENST00000624167 988 ntBASIC14.13□□□□□ -0.15
CCDC58Q4VC31 ABCB7-201ENST00000253577 2377 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 SPAG9-222ENST00000618113 8246 ntAPPRIS ALT1 TSL 5 BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 ELMOD1-201ENST00000265840 2852 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 IFT52-201ENST00000373030 1757 ntAPPRIS P1 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 ITGB4-206ENST00000579662 5554 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 SLC27A3-201ENST00000271857 3351 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 RUNX3-201ENST00000308873 3861 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 C10orf107-201ENST00000330194 1685 ntAPPRIS P2 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 FAM219A-203ENST00000379080 3591 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 PPHLN1-201ENST00000256678 1820 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 TEX264-202ENST00000395057 1555 ntAPPRIS P3 TSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 PMS2P7-201ENST00000506558 1336 ntBASIC14.13□□□□□ -0.15
CCDC58Q4VC31 ZNF663P-201ENST00000400371 2722 ntTSL 1 (best) BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 SHOX-201ENST00000334060 1951 ntTSL 5 BASIC14.13□□□□□ -0.15
CCDC58Q4VC31 TRIM17-205ENST00000456946 1731 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 FBXL19-202ENST00000380310 3796 ntAPPRIS P2 TSL 2 BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 APP-205ENST00000358918 2366 ntTSL 5 BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 MAD1L1-203ENST00000402746 2355 ntTSL 2 BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 CDH23-201ENST00000224721 11139 ntAPPRIS P5 TSL 5 BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 CDH23-214ENST00000622827 11122 ntAPPRIS ALT1 TSL 5 BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 TAS1R3-201ENST00000339381 3433 ntAPPRIS P1 TSL 2 BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 GGT1-202ENST00000400380 2540 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 RAPGEF1-202ENST00000372190 6045 ntAPPRIS P4 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 HEATR3-201ENST00000299192 3560 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 CLASP2-203ENST00000359576 7141 ntAPPRIS P5 TSL 5 BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 PVR-203ENST00000403059 3078 ntAPPRIS ALT2 TSL 2 BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 NDUFA11-202ENST00000418389 2406 ntTSL 2 BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 CPEB2-205ENST00000442003 6797 ntAPPRIS ALT2 TSL 5 BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 STIP1-201ENST00000305218 2196 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 FRMD8-202ENST00000355991 3514 ntTSL 2 BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 TKT-202ENST00000423516 2075 ntTSL 2 BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 PIH1D1-201ENST00000262265 1192 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 DECR2-202ENST00000424398 1012 ntTSL 5 BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 TXNRD2-212ENST00000485358 850 ntTSL 2 BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 HILS1-201ENST00000504307 1219 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 MOK-208ENST00000519058 917 ntTSL 2 BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 CYB561D1-208ENST00000528785 1271 ntAPPRIS ALT1 TSL 5 BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 C17orf49-203ENST00000546760 764 ntTSL 5 BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 TMEM88-202ENST00000574668 510 ntTSL 2 BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 RPS6KB1-203ENST00000406116 1982 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 B3GALNT1-203ENST00000392781 3606 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 WASH2P-202ENST00000538033 2800 ntTSL 2 BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 NF2-205ENST00000361452 5884 ntTSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 FAM131A-207ENST00000450976 1335 ntTSL 3 BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 KCP-203ENST00000610776 5108 ntTSL 5 BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 TNRC18-202ENST00000399434 1459 ntTSL 2 BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 INPP5D-201ENST00000359570 5274 ntAPPRIS ALT2 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 TIFA-201ENST00000361717 4157 ntAPPRIS P1 TSL 1 (best) BASIC14.12□□□□□ -0.15
CCDC58Q4VC31 ZBTB47-201ENST00000232974 3781 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 NDRG2-209ENST00000397853 2079 ntAPPRIS P4 TSL 2 BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 SHISA5-210ENST00000444115 2081 ntTSL 2 BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 MEGF10-206ENST00000508365 2365 ntTSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 FOXL1-201ENST00000320241 3655 ntAPPRIS P1 BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 FAHD2B-202ENST00000414820 1388 ntAPPRIS P1 TSL 5 BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 ABLIM3-206ENST00000506113 4569 ntAPPRIS P1 TSL 1 (best) BASIC14.11□□□□□ -0.15
CCDC58Q4VC31 MYO15B-237ENST00000642007 4893 ntBASIC14.11□□□□□ -0.15
Retrieved 100 of 98,524 protein–RNA pairs in 34 ms