Protein–RNA interactions for Protein: Q06945

SOX4, Transcription factor SOX-4, humanhuman

Predicted RBP Predictions only

Length 474 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SOX4Q06945 GABARAP-201ENST00000302386 1634 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX4Q06945 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX4Q06945 CTCF-201ENST00000264010 3939 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX4Q06945 TPST2-201ENST00000338754 5697 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX4Q06945 IKBIP-201ENST00000299157 3189 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX4Q06945 NSMF-205ENST00000371474 3571 ntAPPRIS ALT1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX4Q06945 NSMF-208ENST00000437259 3577 ntAPPRIS ALT1 TSL 5 BASIC16.64■□□□□ 0.25
SOX4Q06945 CCDC144A-202ENST00000340621 2214 ntTSL 2 BASIC16.64■□□□□ 0.25
SOX4Q06945 C15orf38-AP3S2-201ENST00000398333 2439 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
SOX4Q06945 ZNF799-201ENST00000419318 3036 ntTSL 2 BASIC16.64■□□□□ 0.25
SOX4Q06945 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX4Q06945 RETN-201ENST00000221515 520 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX4Q06945 ACKR1-201ENST00000368121 1240 ntBASIC16.64■□□□□ 0.25
SOX4Q06945 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX4Q06945 NDUFC1-203ENST00000394228 761 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
SOX4Q06945 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC16.64■□□□□ 0.25
SOX4Q06945 MPZL1-209ENST00000474859 630 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SOX4Q06945 FTH1P14-201ENST00000482930 551 ntBASIC16.64■□□□□ 0.25
SOX4Q06945 AC104989.1-201ENST00000519711 778 ntBASIC16.64■□□□□ 0.25
SOX4Q06945 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC16.64■□□□□ 0.25
SOX4Q06945 C17orf49-209ENST00000552775 779 ntTSL 5 BASIC16.64■□□□□ 0.25
SOX4Q06945 ANAPC11-216ENST00000579133 563 ntTSL 3 BASIC16.64■□□□□ 0.25
SOX4Q06945 AC005262.2-201ENST00000587701 452 ntTSL 5 BASIC16.64■□□□□ 0.25
SOX4Q06945 SNAP25-AS1-208ENST00000605592 556 ntTSL 5 BASIC16.64■□□□□ 0.25
SOX4Q06945 Six3os1_5.1-201ENST00000611000 271 ntBASIC16.64■□□□□ 0.25
SOX4Q06945 AC244669.2-201ENST00000612320 853 ntBASIC16.64■□□□□ 0.25
SOX4Q06945 RIC8A-217ENST00000626818 159 ntTSL 5 BASIC16.64■□□□□ 0.25
SOX4Q06945 ST3GAL6-214ENST00000483910 1886 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX4Q06945 ING1-203ENST00000375774 2870 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SOX4Q06945 PLPPR5-201ENST00000263177 3288 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX4Q06945 KCND3-202ENST00000315987 2716 ntAPPRIS P4 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX4Q06945 HYAL1-202ENST00000320295 2324 ntAPPRIS P1 TSL 2 BASIC16.64■□□□□ 0.25
SOX4Q06945 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SOX4Q06945 WRAP53-210ENST00000534050 1736 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SOX4Q06945 AC093525.8-201ENST00000624099 1342 ntBASIC16.64■□□□□ 0.25
SOX4Q06945 CXorf38-202ENST00000378421 2380 ntTSL 2 BASIC16.64■□□□□ 0.25
SOX4Q06945 KTN1-AS1-202ENST00000412224 2185 ntTSL 2 BASIC16.64■□□□□ 0.25
SOX4Q06945 PDLIM5-202ENST00000318007 1960 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SOX4Q06945 ZKSCAN7-202ENST00000341840 1757 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
SOX4Q06945 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX4Q06945 DIAPH1-201ENST00000253811 5789 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
SOX4Q06945 DIAPH1-202ENST00000389054 5795 ntAPPRIS P4 TSL 5 BASIC16.64■□□□□ 0.25
SOX4Q06945 DIAPH1-204ENST00000398557 5789 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
SOX4Q06945 AC096667.1-201ENST00000640078 3465 ntTSL 5 BASIC16.64■□□□□ 0.25
SOX4Q06945 MAP3K8-201ENST00000263056 3096 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
SOX4Q06945 PHB-201ENST00000300408 1832 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX4Q06945 ZIC5-201ENST00000267294 4639 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX4Q06945 FGFR4-201ENST00000292408 3122 ntAPPRIS P4 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX4Q06945 BCR-201ENST00000305877 7082 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX4Q06945 FNDC5-201ENST00000373471 2732 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
SOX4Q06945 NDRG2-207ENST00000397847 2084 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SOX4Q06945 FAM118B-210ENST00000627851 1862 ntTSL 5 BASIC16.63■□□□□ 0.25
SOX4Q06945 RTN4IP1-201ENST00000369063 1682 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX4Q06945 KLF10-201ENST00000285407 3097 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX4Q06945 LONRF3-203ENST00000422289 2898 ntTSL 2 BASIC16.63■□□□□ 0.25
SOX4Q06945 MMADHC-203ENST00000428879 1726 ntAPPRIS P1 TSL 2 BASIC16.63■□□□□ 0.25
SOX4Q06945 MBP-203ENST00000359645 1255 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SOX4Q06945 HIST3H2A-201ENST00000366695 895 ntAPPRIS P1 BASIC16.63■□□□□ 0.25
SOX4Q06945 BOLA2P3-201ENST00000404566 256 ntBASIC16.63■□□□□ 0.25
SOX4Q06945 KIF9-205ENST00000432493 633 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SOX4Q06945 SFTPC-202ENST00000437090 773 ntTSL 3 BASIC16.63■□□□□ 0.25
SOX4Q06945 RPS2P32-201ENST00000439199 892 ntBASIC16.63■□□□□ 0.25
SOX4Q06945 AL355864.2-201ENST00000447420 863 ntBASIC16.63■□□□□ 0.25
SOX4Q06945 KRT223P-202ENST00000449164 1292 ntBASIC16.63■□□□□ 0.25
SOX4Q06945 RNF216P1-213ENST00000494947 946 ntTSL 2 BASIC16.63■□□□□ 0.25
SOX4Q06945 AC083973.1-206ENST00000518213 815 ntTSL 3 BASIC16.63■□□□□ 0.25
SOX4Q06945 KSR1-207ENST00000578981 748 ntTSL 4 BASIC16.63■□□□□ 0.25
SOX4Q06945 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC16.63■□□□□ 0.25
SOX4Q06945 TUBB6-213ENST00000591909 1017 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SOX4Q06945 SCGB1C2-201ENST00000595228 478 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX4Q06945 CKMT1A-208ENST00000626814 1073 ntTSL 5 BASIC16.63■□□□□ 0.25
SOX4Q06945 FOLH1-202ENST00000340334 2697 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SOX4Q06945 ZFAND5-204ENST00000376960 2686 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX4Q06945 ETV3-201ENST00000326786 1539 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SOX4Q06945 MAPK8IP1-202ENST00000395629 3180 ntTSL 5 BASIC16.63■□□□□ 0.25
SOX4Q06945 ANXA11-203ENST00000422982 2534 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX4Q06945 PTPRF-209ENST00000438120 6377 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX4Q06945 PGAP2-205ENST00000396993 1566 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SOX4Q06945 NFE2-203ENST00000540264 1833 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX4Q06945 RSPO1-204ENST00000615459 2331 ntTSL 2 BASIC16.63■□□□□ 0.25
SOX4Q06945 YTHDF2-209ENST00000542507 2825 ntAPPRIS P1 TSL 5 BASIC16.63■□□□□ 0.25
SOX4Q06945 MCF2L-208ENST00000397030 6580 ntTSL 2 BASIC16.63■□□□□ 0.25
SOX4Q06945 PIKFYVE-202ENST00000308862 1640 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
SOX4Q06945 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC16.63■□□□□ 0.25
SOX4Q06945 NEU3-206ENST00000532963 1643 ntTSL 2 BASIC16.63■□□□□ 0.25
SOX4Q06945 NCK1-201ENST00000288986 1937 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX4Q06945 GMPR2-231ENST00000620807 1910 ntTSL 5 BASIC16.62■□□□□ 0.25
SOX4Q06945 SALL3-206ENST00000616649 2958 ntTSL 5 BASIC16.62■□□□□ 0.25
SOX4Q06945 PNMA3-202ENST00000593810 1432 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
SOX4Q06945 KCNT1-206ENST00000486577 3760 ntAPPRIS ALT2 TSL 5 BASIC16.62■□□□□ 0.25
SOX4Q06945 ZBTB47-202ENST00000505904 2456 ntTSL 5 BASIC16.62■□□□□ 0.25
SOX4Q06945 NRCAM-217ENST00000613830 3025 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SOX4Q06945 FOXRED1-201ENST00000263578 1970 ntAPPRIS P2 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX4Q06945 EIF1B-AS1-201ENST00000625390 1958 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
SOX4Q06945 ARFGAP1-201ENST00000353546 2776 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX4Q06945 TAPBPL-201ENST00000266556 1741 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX4Q06945 ZNF804A-201ENST00000302277 4690 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
SOX4Q06945 PAPOLB-201ENST00000404991 4262 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
SOX4Q06945 HAUS3-204ENST00000506763 3166 ntTSL 2 BASIC16.62■□□□□ 0.25
SOX4Q06945 CYB561D2-202ENST00000418577 1533 ntAPPRIS P1 TSL 2 BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 45.7 ms