Protein–RNA interactions for Protein: P78527

PRKDC, DNA-dependent protein kinase catalytic subunit, humanhuman

Known RBP Predictions only

Length 4,128 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PRKDCP78527 FAM3B-201ENST00000357985 1088 ntAPPRIS P3 TSL 1 (best) BASIC10.98□□□□□ -0.65
PRKDCP78527 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC10.98□□□□□ -0.65
PRKDCP78527 NACA-202ENST00000393891 1059 ntAPPRIS P1 TSL 1 (best) BASIC10.98□□□□□ -0.65
PRKDCP78527 AC010900.1-201ENST00000449849 1296 ntBASIC10.98□□□□□ -0.65
PRKDCP78527 RTN4RL2-203ENST00000533205 637 ntTSL 3 BASIC10.98□□□□□ -0.65
PRKDCP78527 RPS10-207ENST00000621356 784 ntAPPRIS P1 TSL 2 BASIC10.98□□□□□ -0.65
PRKDCP78527 LINC01229-201ENST00000561510 1494 ntTSL 5 BASIC10.98□□□□□ -0.65
PRKDCP78527 AC244394.1-201ENST00000435000 1665 ntBASIC10.98□□□□□ -0.65
PRKDCP78527 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC10.98□□□□□ -0.65
PRKDCP78527 SH2D3C-205ENST00000420366 2682 ntTSL 2 BASIC10.98□□□□□ -0.65
PRKDCP78527 CCDC110-201ENST00000307588 2898 ntAPPRIS P3 TSL 1 (best) BASIC10.98□□□□□ -0.65
PRKDCP78527 CALCR-207ENST00000426151 1741 ntAPPRIS P3 TSL 1 (best) BASIC10.98□□□□□ -0.65
PRKDCP78527 TAF15-205ENST00000603777 2011 ntAPPRIS ALT2 TSL 5 BASIC10.97□□□□□ -0.65
PRKDCP78527 DOK4-218ENST00000569548 1848 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
PRKDCP78527 AIFM1-201ENST00000287295 2260 ntAPPRIS P4 TSL 1 (best) BASIC10.97□□□□□ -0.65
PRKDCP78527 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
PRKDCP78527 KIAA0513-207ENST00000567328 1873 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
PRKDCP78527 CMTM3-202ENST00000424011 2330 ntAPPRIS P1 TSL 2 BASIC10.97□□□□□ -0.65
PRKDCP78527 AC011416.4-201ENST00000639283 2195 ntTSL 5 BASIC10.97□□□□□ -0.65
PRKDCP78527 ASB3-202ENST00000394717 1734 ntTSL 2 BASIC10.97□□□□□ -0.65
PRKDCP78527 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC10.97□□□□□ -0.65
PRKDCP78527 RPP25L-202ENST00000378959 888 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
PRKDCP78527 AL391832.2-203ENST00000423175 554 ntTSL 3 BASIC10.97□□□□□ -0.65
PRKDCP78527 AP000358.1-201ENST00000456260 156 ntBASIC10.97□□□□□ -0.65
PRKDCP78527 NDUFA3-214ENST00000485876 963 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
PRKDCP78527 AC113347.2-201ENST00000512350 279 ntBASIC10.97□□□□□ -0.65
PRKDCP78527 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC10.97□□□□□ -0.65
PRKDCP78527 SRP14-204ENST00000558720 780 ntTSL 2 BASIC10.97□□□□□ -0.65
PRKDCP78527 AP001184.1-201ENST00000637936 376 ntBASIC10.97□□□□□ -0.65
PRKDCP78527 ARHGAP28-203ENST00000383472 2295 ntAPPRIS ALT2 TSL 5 BASIC10.97□□□□□ -0.65
PRKDCP78527 C11orf24-201ENST00000304271 2063 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
PRKDCP78527 AMBP-201ENST00000265132 1434 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
PRKDCP78527 SHC1P1-201ENST00000425230 1745 ntBASIC10.97□□□□□ -0.65
PRKDCP78527 NOP14-202ENST00000398071 2535 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
PRKDCP78527 FKRP-202ENST00000391909 2801 ntAPPRIS P1 TSL 2 BASIC10.97□□□□□ -0.65
PRKDCP78527 GDF5-202ENST00000374372 2572 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
PRKDCP78527 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
PRKDCP78527 ASCC1-205ENST00000394919 2683 ntAPPRIS P1 TSL 2 BASIC10.97□□□□□ -0.65
PRKDCP78527 LCE3B-201ENST00000335633 288 ntAPPRIS P1 BASIC10.97□□□□□ -0.65
PRKDCP78527 RASSF3-202ENST00000336061 1030 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
PRKDCP78527 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
PRKDCP78527 LSM5-207ENST00000410044 687 ntTSL 3 BASIC10.97□□□□□ -0.65
PRKDCP78527 AC114812.1-201ENST00000421868 689 ntTSL 2 BASIC10.97□□□□□ -0.65
PRKDCP78527 AC093673.1-201ENST00000429630 648 ntTSL 2 BASIC10.97□□□□□ -0.65
PRKDCP78527 RBM4-207ENST00000506523 654 ntTSL 3 BASIC10.97□□□□□ -0.65
PRKDCP78527 AP005212.2-201ENST00000584979 510 ntBASIC10.97□□□□□ -0.65
PRKDCP78527 ALKBH7-202ENST00000596657 603 ntTSL 2 BASIC10.97□□□□□ -0.65
PRKDCP78527 AP000229.1-202ENST00000609365 559 ntTSL 4 BASIC10.97□□□□□ -0.65
PRKDCP78527 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
PRKDCP78527 RRBP1-208ENST00000470422 2070 ntTSL 2 BASIC10.97□□□□□ -0.65
PRKDCP78527 ERLEC1-201ENST00000185150 2433 ntAPPRIS P3 TSL 1 (best) BASIC10.97□□□□□ -0.65
PRKDCP78527 DMPK-204ENST00000447742 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC10.97□□□□□ -0.65
PRKDCP78527 CTSA-202ENST00000354880 1820 ntTSL 2 BASIC10.97□□□□□ -0.65
PRKDCP78527 NPTN-202ENST00000351217 2817 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
PRKDCP78527 ASGR1-201ENST00000269299 1504 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
PRKDCP78527 CDCA5-201ENST00000275517 2587 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
PRKDCP78527 RAN-212ENST00000543796 2661 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
PRKDCP78527 ESD-202ENST00000378720 1192 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
PRKDCP78527 EVA1A-203ENST00000410010 696 ntAPPRIS ALT2 TSL 5 BASIC10.97□□□□□ -0.65
PRKDCP78527 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC10.97□□□□□ -0.65
PRKDCP78527 CHCHD2P9-201ENST00000461726 456 ntBASIC10.97□□□□□ -0.65
PRKDCP78527 AC124068.2-201ENST00000569473 1109 ntBASIC10.97□□□□□ -0.65
PRKDCP78527 KRT17P4-203ENST00000579355 621 ntTSL 3 BASIC10.97□□□□□ -0.65
PRKDCP78527 AL353997.6-201ENST00000583394 621 ntTSL 1 (best) BASIC10.97□□□□□ -0.65
PRKDCP78527 SEPT8-212ENST00000458488 1726 ntTSL 5 BASIC10.97□□□□□ -0.65
PRKDCP78527 SUMO3-203ENST00000397898 1779 ntTSL 3 BASIC10.97□□□□□ -0.65
PRKDCP78527 KLC2-201ENST00000316924 2990 ntAPPRIS P1 TSL 1 (best) BASIC10.97□□□□□ -0.65
PRKDCP78527 AC025183.3-201ENST00000623526 1482 ntBASIC10.97□□□□□ -0.65
PRKDCP78527 GRAMD2B-219ENST00000544396 2822 ntTSL 2 BASIC10.96□□□□□ -0.65
PRKDCP78527 FTSJ1-201ENST00000019019 1986 ntAPPRIS ALT1 TSL 2 BASIC10.96□□□□□ -0.65
PRKDCP78527 ZAP70-201ENST00000264972 2437 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
PRKDCP78527 NR4A1-213ENST00000550082 2029 ntTSL 5 BASIC10.96□□□□□ -0.65
PRKDCP78527 C10orf62-201ENST00000370640 1208 ntAPPRIS P1 BASIC10.96□□□□□ -0.65
PRKDCP78527 HLA-DRB5-201ENST00000374975 1260 ntAPPRIS P1 BASIC10.96□□□□□ -0.65
PRKDCP78527 TRBJ2-6-201ENST00000390418 53 ntAPPRIS P1 BASIC10.96□□□□□ -0.65
PRKDCP78527 ZNF530-203ENST00000597864 634 ntTSL 2 BASIC10.96□□□□□ -0.65
PRKDCP78527 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
PRKDCP78527 FAM90A21P-201ENST00000510875 1396 ntBASIC10.96□□□□□ -0.65
PRKDCP78527 FAM90A15P-201ENST00000514465 1395 ntBASIC10.96□□□□□ -0.65
PRKDCP78527 FAM90A6P-201ENST00000515148 1394 ntBASIC10.96□□□□□ -0.65
PRKDCP78527 FAM90A16P-201ENST00000526662 1395 ntBASIC10.96□□□□□ -0.65
PRKDCP78527 FAM90A9P-201ENST00000527940 1395 ntBASIC10.96□□□□□ -0.65
PRKDCP78527 FAM90A5P-201ENST00000528738 1395 ntBASIC10.96□□□□□ -0.65
PRKDCP78527 FAM90A14P-201ENST00000530386 1395 ntBASIC10.96□□□□□ -0.65
PRKDCP78527 FAM90A13P-201ENST00000534703 1395 ntBASIC10.96□□□□□ -0.65
PRKDCP78527 AC078925.2-201ENST00000624013 1973 ntBASIC10.96□□□□□ -0.65
PRKDCP78527 AP000593.2-201ENST00000542775 1433 ntBASIC10.96□□□□□ -0.65
PRKDCP78527 LINC00612-201ENST00000538094 2213 ntTSL 2 BASIC10.96□□□□□ -0.65
PRKDCP78527 NFIX-210ENST00000588228 1692 ntTSL 2 BASIC10.96□□□□□ -0.65
PRKDCP78527 FBXL12-201ENST00000247977 1852 ntAPPRIS P1 TSL 1 (best) BASIC10.96□□□□□ -0.65
PRKDCP78527 TRPM2-AS-202ENST00000456880 2056 ntTSL 2 BASIC10.96□□□□□ -0.65
PRKDCP78527 LIMS1-206ENST00000414829 439 ntTSL 1 (best) BASIC10.96□□□□□ -0.65
PRKDCP78527 AL589843.1-201ENST00000423924 425 ntTSL 2 BASIC10.96□□□□□ -0.65
PRKDCP78527 LINC00313-207ENST00000451543 413 ntTSL 3 BASIC10.96□□□□□ -0.65
PRKDCP78527 LIMS3-205ENST00000487150 782 ntTSL 3 BASIC10.96□□□□□ -0.65
PRKDCP78527 AC025183.2-201ENST00000503386 428 ntTSL 3 BASIC10.96□□□□□ -0.65
PRKDCP78527 AC025154.2-202ENST00000552379 592 ntTSL 3 BASIC10.96□□□□□ -0.65
PRKDCP78527 MED11-202ENST00000573708 802 ntTSL 2 BASIC10.96□□□□□ -0.65
PRKDCP78527 ZNF175-204ENST00000596504 580 ntTSL 2 BASIC10.96□□□□□ -0.65
PRKDCP78527 OCEL1-206ENST00000597836 1044 ntAPPRIS ALT2 TSL 2 BASIC10.96□□□□□ -0.65
Retrieved 100 of 98,524 protein–RNA pairs in 39.3 ms