Protein–RNA interactions for Protein: P53667

LIMK1, LIM domain kinase 1, humanhuman

Predictions only

Length 647 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LIMK1P53667 AC011510.1-201ENST00000598541 286 ntTSL 3 BASIC15.47■□□□□ 0.07
LIMK1P53667 AC010326.2-201ENST00000602124 1020 ntAPPRIS P1 TSL 3 BASIC15.47■□□□□ 0.07
LIMK1P53667 ELOA3C-201ENST00000620688 1218 ntAPPRIS P1 BASIC15.47■□□□□ 0.07
LIMK1P53667 UBFD1-201ENST00000395878 5110 ntAPPRIS P2 TSL 2 BASIC15.47■□□□□ 0.07
LIMK1P53667 NEUROD1-201ENST00000295108 2852 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LIMK1P53667 ABLIM2-201ENST00000341937 2589 ntAPPRIS ALT2 TSL 1 (best) BASIC15.47■□□□□ 0.07
LIMK1P53667 MAPK3-212ENST00000484663 2567 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
LIMK1P53667 PIK3R6-203ENST00000614407 2265 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LIMK1P53667 FOXN1-203ENST00000579795 2145 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LIMK1P53667 LETM2-201ENST00000297720 1693 ntTSL 2 BASIC15.47■□□□□ 0.07
LIMK1P53667 AGFG1-202ENST00000373671 1669 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
LIMK1P53667 MYCBPAP-203ENST00000436259 3102 ntAPPRIS ALT2 TSL 5 BASIC15.47■□□□□ 0.07
LIMK1P53667 GOLGA2P2Y-202ENST00000423852 1506 ntBASIC15.47■□□□□ 0.07
LIMK1P53667 AC023824.1-201ENST00000562945 2975 ntBASIC15.47■□□□□ 0.07
LIMK1P53667 KDSR-202ENST00000406396 5447 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LIMK1P53667 ZNF382-202ENST00000423582 2657 ntTSL 1 (best) BASIC15.47■□□□□ 0.07
LIMK1P53667 HYAL1-201ENST00000266031 2517 ntAPPRIS P1 TSL 1 (best) BASIC15.47■□□□□ 0.07
LIMK1P53667 AC126177.1-201ENST00000547829 2218 ntBASIC15.47■□□□□ 0.07
LIMK1P53667 ICA1L-201ENST00000358299 3457 ntAPPRIS P1 TSL 2 BASIC15.47■□□□□ 0.07
LIMK1P53667 PXK-204ENST00000383716 3035 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
LIMK1P53667 FAM135A-209ENST00000505769 4806 ntTSL 5 BASIC15.46■□□□□ 0.07
LIMK1P53667 DUSP13-208ENST00000478873 1335 ntTSL 5 BASIC15.46■□□□□ 0.07
LIMK1P53667 ENO3-206ENST00000519584 1322 ntTSL 2 BASIC15.46■□□□□ 0.07
LIMK1P53667 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC15.46■□□□□ 0.07
LIMK1P53667 KANSL1L-201ENST00000281772 4754 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
LIMK1P53667 SLC39A14-201ENST00000240095 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
LIMK1P53667 SNTB1-201ENST00000395601 5164 ntAPPRIS P1 TSL 5 BASIC15.46■□□□□ 0.07
LIMK1P53667 HSPB7-204ENST00000411503 2128 ntAPPRIS ALT1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LIMK1P53667 PGBD5-202ENST00000525115 1569 ntTSL 2 BASIC15.46■□□□□ 0.07
LIMK1P53667 AP5B1-201ENST00000532090 4811 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LIMK1P53667 AIFM3-202ENST00000399167 2387 ntAPPRIS P3 TSL 2 BASIC15.46■□□□□ 0.07
LIMK1P53667 AIFM3-207ENST00000440238 2368 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.07
LIMK1P53667 DNM2-202ENST00000359692 3588 ntAPPRIS P5 TSL 1 (best) BASIC15.46■□□□□ 0.07
LIMK1P53667 LRRC38-201ENST00000376085 2209 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LIMK1P53667 RUFY2-205ENST00000454950 2613 ntTSL 2 BASIC15.46■□□□□ 0.07
LIMK1P53667 SBSPON-201ENST00000297354 3801 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LIMK1P53667 TSHR-202ENST00000342443 1281 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
LIMK1P53667 DGCR5-204ENST00000440005 1299 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
LIMK1P53667 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC15.46■□□□□ 0.07
LIMK1P53667 AC078785.1-203ENST00000467342 573 ntTSL 4 BASIC15.46■□□□□ 0.07
LIMK1P53667 ST8SIA2-202ENST00000539113 1089 ntTSL 1 (best) BASIC15.46■□□□□ 0.07
LIMK1P53667 TAPBPL-205ENST00000544021 772 ntTSL 3 BASIC15.46■□□□□ 0.07
LIMK1P53667 AC025279.2-201ENST00000569730 653 ntBASIC15.46■□□□□ 0.07
LIMK1P53667 CROCCP3-204ENST00000590118 574 ntTSL 4 BASIC15.46■□□□□ 0.07
LIMK1P53667 TUBB6-210ENST00000590967 430 ntTSL 3 BASIC15.46■□□□□ 0.07
LIMK1P53667 RBM8A-206ENST00000632555 751 ntAPPRIS P1 TSL 3 BASIC15.46■□□□□ 0.07
LIMK1P53667 HPCAL1-207ENST00000620771 1941 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
LIMK1P53667 ACP5-202ENST00000412435 1527 ntAPPRIS P1 TSL 2 BASIC15.46■□□□□ 0.07
LIMK1P53667 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.07
LIMK1P53667 PAUPAR-201ENST00000630360 2965 ntBASIC15.46■□□□□ 0.07
LIMK1P53667 PLEKHN1-201ENST00000379407 2194 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.07
LIMK1P53667 PCBP1-201ENST00000303577 1750 ntAPPRIS P1 BASIC15.46■□□□□ 0.07
LIMK1P53667 USE1-206ENST00000595101 1776 ntTSL 2 BASIC15.46■□□□□ 0.07
LIMK1P53667 RAI1-201ENST00000353383 7662 ntAPPRIS P2 TSL 1 (best) BASIC15.46■□□□□ 0.07
LIMK1P53667 VPS54-201ENST00000272322 3463 ntAPPRIS P3 TSL 5 BASIC15.46■□□□□ 0.07
LIMK1P53667 NTRK3-202ENST00000355254 2938 ntAPPRIS ALT2 TSL 5 BASIC15.46■□□□□ 0.06
LIMK1P53667 SMARCC2-202ENST00000347471 3839 ntAPPRIS ALT2 TSL 1 (best) BASIC15.46■□□□□ 0.06
LIMK1P53667 FAM104A-201ENST00000403627 2798 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
LIMK1P53667 IL3RA-202ENST00000381469 1476 ntTSL 5 BASIC15.46■□□□□ 0.06
LIMK1P53667 MAP3K3-202ENST00000361733 3529 ntAPPRIS P3 TSL 1 (best) BASIC15.46■□□□□ 0.06
LIMK1P53667 FBXW9-201ENST00000393261 1738 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
LIMK1P53667 QRFPR-202ENST00000394427 1708 ntAPPRIS P1 TSL 1 (best) BASIC15.46■□□□□ 0.06
LIMK1P53667 BID-213ENST00000615414 2236 ntTSL 5 BASIC15.45■□□□□ 0.06
LIMK1P53667 PNKD-202ENST00000258362 2991 ntAPPRIS ALT2 TSL 1 (best) BASIC15.45■□□□□ 0.06
LIMK1P53667 MIIP-201ENST00000235332 1573 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
LIMK1P53667 GPS1-228ENST00000624957 1825 ntAPPRIS ALT1 TSL 5 BASIC15.45■□□□□ 0.06
LIMK1P53667 HCG18-233ENST00000412685 2552 ntTSL 2 BASIC15.45■□□□□ 0.06
LIMK1P53667 PPRC1-201ENST00000278070 5330 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
LIMK1P53667 PTPRU-202ENST00000373779 5579 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LIMK1P53667 ITGB4-201ENST00000200181 5919 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LIMK1P53667 SYNRG-222ENST00000614941 3406 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LIMK1P53667 LAPTM4B-201ENST00000445593 3173 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LIMK1P53667 AC007495.1-201ENST00000501259 2678 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LIMK1P53667 MIF4GD-208ENST00000579297 1419 ntTSL 2 BASIC15.45■□□□□ 0.06
LIMK1P53667 AC007728.2-201ENST00000563315 2296 ntTSL 5 BASIC15.45■□□□□ 0.06
LIMK1P53667 C17orf100-201ENST00000542475 1756 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
LIMK1P53667 GPAA1P2-202ENST00000606848 1787 ntBASIC15.45■□□□□ 0.06
LIMK1P53667 CBY1-201ENST00000216029 1133 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
LIMK1P53667 IGF1-201ENST00000307046 1097 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LIMK1P53667 PRSS55-201ENST00000328655 1124 ntAPPRIS P1 TSL 1 (best) BASIC15.45■□□□□ 0.06
LIMK1P53667 LINC01121-201ENST00000378479 1095 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LIMK1P53667 IGF1-203ENST00000392904 761 ntTSL 5 BASIC15.45■□□□□ 0.06
LIMK1P53667 AC004987.2-201ENST00000395959 1148 ntBASIC15.45■□□□□ 0.06
LIMK1P53667 ARL16-201ENST00000397498 1227 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LIMK1P53667 AC104457.1-201ENST00000401024 814 ntBASIC15.45■□□□□ 0.06
LIMK1P53667 LINC01088-201ENST00000437737 973 ntTSL 5 BASIC15.45■□□□□ 0.06
LIMK1P53667 AC244250.1-201ENST00000438185 451 ntTSL 2 BASIC15.45■□□□□ 0.06
LIMK1P53667 MTX1P1-201ENST00000440904 838 ntBASIC15.45■□□□□ 0.06
LIMK1P53667 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC15.45■□□□□ 0.06
LIMK1P53667 HIST2H2BC-201ENST00000498492 580 ntBASIC15.45■□□□□ 0.06
LIMK1P53667 SLC45A2-204ENST00000509381 1040 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LIMK1P53667 CYB561A3-219ENST00000544118 1136 ntTSL 5 BASIC15.45■□□□□ 0.06
LIMK1P53667 CHMP4BP1-201ENST00000556017 588 ntBASIC15.45■□□□□ 0.06
LIMK1P53667 AC108134.3-202ENST00000571404 1207 ntTSL 5 BASIC15.45■□□□□ 0.06
LIMK1P53667 NAT9-222ENST00000583476 583 ntTSL 3 BASIC15.45■□□□□ 0.06
LIMK1P53667 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC15.45■□□□□ 0.06
LIMK1P53667 ARL16-214ENST00000621051 1181 ntTSL 1 (best) BASIC15.45■□□□□ 0.06
LIMK1P53667 RELA-227ENST00000615805 2236 ntTSL 5 BASIC15.45■□□□□ 0.06
LIMK1P53667 SF3A2-201ENST00000221494 1963 ntAPPRIS P2 TSL 1 (best) BASIC15.45■□□□□ 0.06
LIMK1P53667 IER2-203ENST00000588173 2934 ntAPPRIS P1 BASIC15.45■□□□□ 0.06
Retrieved 100 of 98,524 protein–RNA pairs in 39.5 ms