Protein–RNA interactions for Protein: P20585

MSH3, DNA mismatch repair protein Msh3, humanhuman

Predictions only

Length 1,137 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MSH3P20585 BTBD7P1-201ENST00000447253 1453 ntBASIC15.66■□□□□ 0.1
MSH3P20585 TIPRL-202ENST00000367833 3032 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSH3P20585 FAM156B-202ENST00000509613 1701 ntAPPRIS P2 TSL 2 BASIC15.66■□□□□ 0.1
MSH3P20585 AC009053.1-201ENST00000566802 2320 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
MSH3P20585 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
MSH3P20585 SEMA4C-201ENST00000305476 3545 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSH3P20585 AC126755.1-201ENST00000525846 6405 ntBASIC15.66■□□□□ 0.1
MSH3P20585 MPP6-201ENST00000222644 8452 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSH3P20585 Z97205.2-201ENST00000564697 1639 ntBASIC15.66■□□□□ 0.1
MSH3P20585 GRIN2A-201ENST00000330684 5031 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSH3P20585 CYB561D1-202ENST00000369868 1085 ntTSL 2 BASIC15.66■□□□□ 0.1
MSH3P20585 CYSRT1-201ENST00000409414 1297 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSH3P20585 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
MSH3P20585 DIRC3-201ENST00000423123 552 ntAPPRIS P1 TSL 4 BASIC15.66■□□□□ 0.1
MSH3P20585 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC15.66■□□□□ 0.1
MSH3P20585 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC15.66■□□□□ 0.1
MSH3P20585 PTGES3-205ENST00000456859 957 ntTSL 2 BASIC15.66■□□□□ 0.1
MSH3P20585 LINC01184-209ENST00000514573 609 ntTSL 3 BASIC15.66■□□□□ 0.1
MSH3P20585 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC15.66■□□□□ 0.1
MSH3P20585 RAB26-202ENST00000541451 944 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
MSH3P20585 COQ7-202ENST00000544894 819 ntAPPRIS ALT2 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSH3P20585 AC027243.1-201ENST00000559539 758 ntTSL 3 BASIC15.66■□□□□ 0.1
MSH3P20585 AC009407.1-201ENST00000568958 598 ntBASIC15.66■□□□□ 0.1
MSH3P20585 PRR29-204ENST00000577953 565 ntTSL 4 BASIC15.66■□□□□ 0.1
MSH3P20585 INO80C-206ENST00000586489 594 ntTSL 3 BASIC15.66■□□□□ 0.1
MSH3P20585 ZNF586-205ENST00000598885 578 ntTSL 4 BASIC15.66■□□□□ 0.1
MSH3P20585 C11orf53-203ENST00000637637 1049 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
MSH3P20585 KIF21A-202ENST00000361961 6601 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
MSH3P20585 LINC01978-202ENST00000574526 1540 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
MSH3P20585 DEPDC7-202ENST00000311388 2012 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
MSH3P20585 MAU2-201ENST00000262815 4994 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSH3P20585 DKFZP434H168-201ENST00000567381 1905 ntBASIC15.66■□□□□ 0.1
MSH3P20585 AFAP1-201ENST00000358461 7516 ntAPPRIS P3 TSL 2 BASIC15.66■□□□□ 0.1
MSH3P20585 ADAMTSL4-204ENST00000369041 2908 ntTSL 5 BASIC15.66■□□□□ 0.1
MSH3P20585 ASH2L-212ENST00000545394 2808 ntTSL 2 BASIC15.66■□□□□ 0.1
MSH3P20585 ANKS6-202ENST00000375019 2586 ntTSL 5 BASIC15.66■□□□□ 0.1
MSH3P20585 LMF2-202ENST00000474879 2582 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSH3P20585 ACSM2A-203ENST00000417235 1835 ntTSL 2 BASIC15.66■□□□□ 0.1
MSH3P20585 CELF4-221ENST00000601019 1836 ntAPPRIS ALT1 TSL 5 BASIC15.66■□□□□ 0.1
MSH3P20585 SLC41A1-201ENST00000367137 4997 ntAPPRIS P1 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSH3P20585 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSH3P20585 LINC02268-202ENST00000515444 1328 ntTSL 2 BASIC15.66■□□□□ 0.1
MSH3P20585 ARHGAP45-212ENST00000590577 3218 ntTSL 2 BASIC15.66■□□□□ 0.1
MSH3P20585 PHKG2-204ENST00000563588 5539 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSH3P20585 IBA57-201ENST00000366711 7817 ntAPPRIS P1 TSL 2 BASIC15.66■□□□□ 0.1
MSH3P20585 TMPO-AS1-202ENST00000548760 3357 ntTSL 1 (best) BASIC15.66■□□□□ 0.1
MSH3P20585 EPS8L2-201ENST00000318562 3148 ntAPPRIS P2 TSL 1 (best) BASIC15.66■□□□□ 0.1
MSH3P20585 CYP2R1-207ENST00000532378 1746 ntTSL 5 BASIC15.65■□□□□ 0.1
MSH3P20585 IPPK-201ENST00000287996 4401 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
MSH3P20585 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC15.65■□□□□ 0.1
MSH3P20585 ITGB2-207ENST00000397854 2592 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
MSH3P20585 PDE6G-204ENST00000573076 1505 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
MSH3P20585 TSEN2-207ENST00000454502 1909 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
MSH3P20585 FES-204ENST00000414248 2327 ntTSL 2 BASIC15.65■□□□□ 0.1
MSH3P20585 ZBTB7C-204ENST00000586438 4899 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
MSH3P20585 SLC43A2-204ENST00000571650 3261 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
MSH3P20585 GPR61-206ENST00000616874 2459 ntAPPRIS P1 TSL 2 BASIC15.65■□□□□ 0.1
MSH3P20585 SPCS1-201ENST00000233025 1082 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
MSH3P20585 CLEC1B-201ENST00000298527 952 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
MSH3P20585 STPG3-201ENST00000388931 1207 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
MSH3P20585 RAD18-204ENST00000418463 563 ntTSL 4 BASIC15.65■□□□□ 0.1
MSH3P20585 RAD18-205ENST00000421052 582 ntTSL 3 BASIC15.65■□□□□ 0.1
MSH3P20585 TIMM17B-208ENST00000495490 939 ntTSL 5 BASIC15.65■□□□□ 0.1
MSH3P20585 FBXO4-206ENST00000509134 1284 ntTSL 5 BASIC15.65■□□□□ 0.1
MSH3P20585 RAB35-202ENST00000534951 939 ntTSL 2 BASIC15.65■□□□□ 0.1
MSH3P20585 AP000943.3-201ENST00000536540 954 ntTSL 3 BASIC15.65■□□□□ 0.1
MSH3P20585 AC135586.1-201ENST00000539323 574 ntBASIC15.65■□□□□ 0.1
MSH3P20585 AC087612.1-201ENST00000560238 658 ntTSL 5 BASIC15.65■□□□□ 0.1
MSH3P20585 GABARAP-205ENST00000573928 476 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
MSH3P20585 C1QTNF1-212ENST00000583904 1129 ntAPPRIS P1 TSL 4 BASIC15.65■□□□□ 0.1
MSH3P20585 YPEL2-205ENST00000585166 881 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
MSH3P20585 AC005746.1-201ENST00000589244 672 ntTSL 3 BASIC15.65■□□□□ 0.1
MSH3P20585 AC010619.1-201ENST00000599536 675 ntAPPRIS P1 TSL 5 BASIC15.65■□□□□ 0.1
MSH3P20585 AJ011932.1-201ENST00000621707 465 ntBASIC15.65■□□□□ 0.1
MSH3P20585 NFATC1-207ENST00000545796 3558 ntTSL 2 BASIC15.65■□□□□ 0.1
MSH3P20585 AHSA1-201ENST00000216479 1402 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
MSH3P20585 FSD2-202ENST00000541889 2356 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
MSH3P20585 LMF1-AS1-202ENST00000569574 1408 ntTSL 3 BASIC15.65■□□□□ 0.1
MSH3P20585 LUC7L3-202ENST00000393227 2284 ntTSL 1 (best) BASIC15.65■□□□□ 0.1
MSH3P20585 TOM1-206ENST00000425375 2252 ntTSL 2 BASIC15.65■□□□□ 0.1
MSH3P20585 TRMT1-203ENST00000437766 2263 ntAPPRIS P3 TSL 1 (best) BASIC15.65■□□□□ 0.1
MSH3P20585 SYBU-219ENST00000528647 2995 ntAPPRIS P4 TSL 2 BASIC15.65■□□□□ 0.1
MSH3P20585 HEMK1-201ENST00000232854 6087 ntAPPRIS P1 TSL 1 (best) BASIC15.65■□□□□ 0.1
MSH3P20585 NR2E3-204ENST00000621736 2032 ntTSL 2 BASIC15.65■□□□□ 0.1
MSH3P20585 TAP2-201ENST00000374897 5684 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
MSH3P20585 TSSC2-204ENST00000529482 2337 ntTSL 2 BASIC15.65■□□□□ 0.1
MSH3P20585 MYCBPAP-201ENST00000323776 3186 ntAPPRIS P2 TSL 1 (best) BASIC15.65■□□□□ 0.1
MSH3P20585 KLHDC2-206ENST00000554589 1641 ntTSL 5 BASIC15.65■□□□□ 0.1
MSH3P20585 LOX-206ENST00000639739 1626 ntTSL 5 BASIC15.65■□□□□ 0.1
MSH3P20585 GUCD1-204ENST00000407471 3482 ntAPPRIS P3 TSL 5 BASIC15.64■□□□□ 0.1
MSH3P20585 C16orf58-201ENST00000327237 2793 ntAPPRIS P2 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSH3P20585 DKC1-213ENST00000620277 3079 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSH3P20585 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC15.64■□□□□ 0.09
MSH3P20585 CUX1-211ENST00000546411 4212 ntAPPRIS ALT2 TSL 5 BASIC15.64■□□□□ 0.09
MSH3P20585 FBXL5-201ENST00000341285 3385 ntAPPRIS P3 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSH3P20585 TGOLN2-203ENST00000398263 6138 ntAPPRIS ALT2 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSH3P20585 PGC-202ENST00000373025 1371 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSH3P20585 CRH-201ENST00000276571 1543 ntAPPRIS P1 TSL 1 (best) BASIC15.64■□□□□ 0.09
MSH3P20585 DYNC1LI2-203ENST00000443351 1502 ntTSL 2 BASIC15.64■□□□□ 0.09
MSH3P20585 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC15.64■□□□□ 0.09
Retrieved 100 of 98,524 protein–RNA pairs in 34.9 ms