Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 GRAMD1C-201ENST00000358160 4177 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB1P09429 POMT1-205ENST00000404875 2821 ntTSL 2 BASIC18.51■□□□□ 0.55
HMGB1P09429 ADORA1-204ENST00000367236 3407 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB1P09429 KIF18B-203ENST00000590129 2569 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB1P09429 FAM153B-220ENST00000515817 1966 ntAPPRIS P2 TSL 5 BASIC18.51■□□□□ 0.55
HMGB1P09429 NMRAL1-201ENST00000283429 1376 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB1P09429 DNAJA4-206ENST00000446172 1399 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB1P09429 AC007326.5-201ENST00000640084 1382 ntTSL 5 BASIC18.51■□□□□ 0.55
HMGB1P09429 MAP2K3-202ENST00000342679 2303 ntAPPRIS P1 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB1P09429 ARMC5-204ENST00000538189 3017 ntAPPRIS ALT2 TSL 2 BASIC18.51■□□□□ 0.55
HMGB1P09429 AC138969.3-201ENST00000546612 1459 ntBASIC18.51■□□□□ 0.55
HMGB1P09429 AC138932.2-201ENST00000548268 1459 ntBASIC18.51■□□□□ 0.55
HMGB1P09429 AC126755.4-201ENST00000549796 1459 ntBASIC18.51■□□□□ 0.55
HMGB1P09429 CRAMP1-201ENST00000293925 7671 ntAPPRIS P1 TSL 5 BASIC18.51■□□□□ 0.55
HMGB1P09429 DHX36-202ENST00000329463 2985 ntAPPRIS ALT2 TSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB1P09429 DRC3-202ENST00000399182 1923 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB1P09429 DDX55-203ENST00000421670 1574 ntTSL 1 (best) BASIC18.51■□□□□ 0.55
HMGB1P09429 FADS2-210ENST00000522056 1689 ntTSL 2 BASIC18.5■□□□□ 0.55
HMGB1P09429 AKR7L-202ENST00000429712 1313 ntAPPRIS P5 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB1P09429 SLCO5A1-203ENST00000524945 3725 ntTSL 2 BASIC18.5■□□□□ 0.55
HMGB1P09429 RECQL4-209ENST00000617875 3809 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB1P09429 CNDP1-201ENST00000358821 2215 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB1P09429 TOB1-202ENST00000499247 2229 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB1P09429 ZNF397-201ENST00000261333 1419 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB1P09429 GGACT-202ENST00000455100 2678 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB1P09429 WRAP73-202ENST00000378322 1998 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB1P09429 NFIC-211ENST00000641145 8399 ntBASIC18.5■□□□□ 0.55
HMGB1P09429 AC004805.1-201ENST00000577662 1616 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
HMGB1P09429 IVL-201ENST00000368764 2153 ntAPPRIS P1 TSL 2 BASIC18.5■□□□□ 0.55
HMGB1P09429 DDX19B-203ENST00000393657 1717 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB1P09429 FCRLB-204ENST00000367946 1152 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB1P09429 WLS-203ENST00000370971 700 ntTSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB1P09429 AKIP1-204ENST00000396648 1084 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
HMGB1P09429 AC091729.2-201ENST00000415656 302 ntTSL 3 BASIC18.5■□□□□ 0.55
HMGB1P09429 TSSK5P-201ENST00000423978 907 ntBASIC18.5■□□□□ 0.55
HMGB1P09429 MIPEPP3-202ENST00000424756 347 ntTSL 3 BASIC18.5■□□□□ 0.55
HMGB1P09429 AC055876.3-201ENST00000431496 288 ntBASIC18.5■□□□□ 0.55
HMGB1P09429 AL669970.3-201ENST00000435284 428 ntTSL 3 BASIC18.5■□□□□ 0.55
HMGB1P09429 TEX48-201ENST00000436752 708 ntAPPRIS P1 TSL 5 BASIC18.5■□□□□ 0.55
HMGB1P09429 AL589923.1-201ENST00000441473 316 ntTSL 5 BASIC18.5■□□□□ 0.55
HMGB1P09429 AC006001.2-201ENST00000448096 393 ntTSL 3 BASIC18.5■□□□□ 0.55
HMGB1P09429 AC009477.1-201ENST00000452936 217 ntBASIC18.5■□□□□ 0.55
HMGB1P09429 IGHV3-42-201ENST00000520410 361 ntBASIC18.5■□□□□ 0.55
HMGB1P09429 AC044860.1-202ENST00000559481 777 ntBASIC18.5■□□□□ 0.55
HMGB1P09429 IGHV3OR16-13-201ENST00000562905 353 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
HMGB1P09429 AC138649.4-201ENST00000612222 287 ntBASIC18.5■□□□□ 0.55
HMGB1P09429 TEX48-202ENST00000612244 662 ntTSL 3 BASIC18.5■□□□□ 0.55
HMGB1P09429 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC18.5■□□□□ 0.55
HMGB1P09429 OR4C6-202ENST00000641251 1058 ntAPPRIS P1 BASIC18.5■□□□□ 0.55
HMGB1P09429 NEO1-202ENST00000339362 7342 ntAPPRIS P3 TSL 5 BASIC18.5■□□□□ 0.55
HMGB1P09429 FOXJ2-201ENST00000162391 5523 ntAPPRIS P2 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB1P09429 CYP2AB1P-202ENST00000454440 1456 ntBASIC18.5■□□□□ 0.55
HMGB1P09429 RDM1-227ENST00000619876 1491 ntAPPRIS ALT2 TSL 2 BASIC18.5■□□□□ 0.55
HMGB1P09429 COX6B2-201ENST00000326529 1663 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB1P09429 RAB5C-201ENST00000346213 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB1P09429 STAT5B-201ENST00000293328 5103 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB1P09429 AC004834.1-201ENST00000640784 2412 ntTSL 3 BASIC18.5■□□□□ 0.55
HMGB1P09429 FOXO3-201ENST00000343882 7308 ntAPPRIS P1 TSL 1 (best) BASIC18.5■□□□□ 0.55
HMGB1P09429 TMED7-TICAM2-202ENST00000333314 3453 ntTSL 2 BASIC18.5■□□□□ 0.55
HMGB1P09429 MDM2-209ENST00000393412 1404 ntTSL 5 BASIC18.49■□□□□ 0.55
HMGB1P09429 SIGLEC8-203ENST00000430817 1528 ntTSL 2 BASIC18.49■□□□□ 0.55
HMGB1P09429 SLC22A6-204ENST00000458333 1521 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB1P09429 HSD17B6-206ENST00000555159 1525 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
HMGB1P09429 EIF2B4-205ENST00000445933 1608 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB1P09429 ZBTB14-202ENST00000400143 1814 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB1P09429 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB1P09429 WRAP53-202ENST00000396463 1905 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB1P09429 HOXA3-202ENST00000396352 3263 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB1P09429 SHANK2-204ENST00000409530 2123 ntTSL 5 BASIC18.49■□□□□ 0.55
HMGB1P09429 TNN-201ENST00000239462 5008 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
HMGB1P09429 CLN5-208ENST00000636183 6664 ntAPPRIS P2 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB1P09429 CARD11-203ENST00000396946 4366 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB1P09429 SYNCRIP-202ENST00000369622 3023 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB1P09429 SYBU-205ENST00000422135 3226 ntAPPRIS ALT2 TSL 5 BASIC18.49■□□□□ 0.55
HMGB1P09429 PICALM-204ENST00000526033 3613 ntAPPRIS ALT1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB1P09429 HCST-201ENST00000246551 613 ntAPPRIS P3 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB1P09429 CCL25-201ENST00000253451 953 ntAPPRIS ALT2 TSL 2 BASIC18.49■□□□□ 0.55
HMGB1P09429 MRPL55-202ENST00000336300 722 ntAPPRIS P1 TSL 2 BASIC18.49■□□□□ 0.55
HMGB1P09429 C14orf178-201ENST00000355883 642 ntAPPRIS P3 TSL 5 BASIC18.49■□□□□ 0.55
HMGB1P09429 MRPL55-206ENST00000366732 722 ntTSL 3 BASIC18.49■□□□□ 0.55
HMGB1P09429 GSTO1-201ENST00000369710 900 ntTSL 2 BASIC18.49■□□□□ 0.55
HMGB1P09429 HSD17B10-203ENST00000375304 916 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB1P09429 AL365255.1-202ENST00000413887 363 ntTSL 5 BASIC18.49■□□□□ 0.55
HMGB1P09429 C1orf210-201ENST00000423420 629 ntAPPRIS P1 TSL 3 BASIC18.49■□□□□ 0.55
HMGB1P09429 AC114501.2-201ENST00000439631 535 ntBASIC18.49■□□□□ 0.55
HMGB1P09429 KRT18P43-201ENST00000469825 1281 ntBASIC18.49■□□□□ 0.55
HMGB1P09429 ZIC4-214ENST00000491672 925 ntTSL 4 BASIC18.49■□□□□ 0.55
HMGB1P09429 LINC02437-201ENST00000505053 911 ntTSL 3 BASIC18.49■□□□□ 0.55
HMGB1P09429 MSC-AS1-206ENST00000519751 596 ntTSL 4 BASIC18.49■□□□□ 0.55
HMGB1P09429 FAU-205ENST00000527548 538 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
HMGB1P09429 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB1P09429 PSMD7-204ENST00000567958 692 ntTSL 3 BASIC18.49■□□□□ 0.55
HMGB1P09429 OTUB1-206ENST00000535715 1391 ntTSL 5 BASIC18.49■□□□□ 0.55
HMGB1P09429 CRYM-201ENST00000219599 1471 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB1P09429 DPEP1-201ENST00000261615 1592 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB1P09429 DMTN-209ENST00000517600 1569 ntTSL 5 BASIC18.49■□□□□ 0.55
HMGB1P09429 RAPSN-201ENST00000298854 1671 ntAPPRIS P1 TSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB1P09429 HDAC5-202ENST00000336057 5040 ntTSL 1 (best) BASIC18.49■□□□□ 0.55
HMGB1P09429 BRF1-201ENST00000327359 2292 ntTSL 2 BASIC18.49■□□□□ 0.55
HMGB1P09429 AC073264.3-201ENST00000636941 2577 ntAPPRIS P1 TSL 5 BASIC18.49■□□□□ 0.55
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms