Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 CACNA1A-221ENST00000636012 7500 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
HLA-DOAP06340 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DOAP06340 ARHGAP26-202ENST00000378004 9200 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DOAP06340 ARNTL2-208ENST00000544915 6785 ntAPPRIS ALT2 TSL 5 BASIC18.4■□□□□ 0.54
HLA-DOAP06340 PLK2-215ENST00000617412 2792 ntTSL 5 BASIC18.4■□□□□ 0.54
HLA-DOAP06340 MLPH-204ENST00000410032 2171 ntAPPRIS ALT2 TSL 2 BASIC18.4■□□□□ 0.54
HLA-DOAP06340 FAM218A-201ENST00000513876 2175 ntAPPRIS P1 BASIC18.4■□□□□ 0.54
HLA-DOAP06340 CNGA4-201ENST00000379936 1863 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DOAP06340 RPF1-202ENST00000370656 724 ntTSL 2 BASIC18.4■□□□□ 0.54
HLA-DOAP06340 NDUFA3-203ENST00000391763 338 ntTSL 2 BASIC18.4■□□□□ 0.54
HLA-DOAP06340 PGGT1BP2-201ENST00000398621 1028 ntBASIC18.4■□□□□ 0.54
HLA-DOAP06340 BLVRA-202ENST00000402924 1161 ntAPPRIS P1 TSL 2 BASIC18.4■□□□□ 0.54
HLA-DOAP06340 TMEM210-201ENST00000413619 873 ntAPPRIS P1 TSL 5 BASIC18.4■□□□□ 0.54
HLA-DOAP06340 AC007405.2-202ENST00000418106 540 ntTSL 4 BASIC18.4■□□□□ 0.54
HLA-DOAP06340 KCNQ1-AS1-201ENST00000440887 1084 ntTSL 5 BASIC18.4■□□□□ 0.54
HLA-DOAP06340 FO681548.1-201ENST00000455617 1132 ntBASIC18.4■□□□□ 0.54
HLA-DOAP06340 HOXC-AS3-201ENST00000509870 544 ntTSL 4 BASIC18.4■□□□□ 0.54
HLA-DOAP06340 CEP57L1-208ENST00000519095 908 ntTSL 3 BASIC18.4■□□□□ 0.54
HLA-DOAP06340 HBS1L-208ENST00000525067 582 ntTSL 3 BASIC18.4■□□□□ 0.54
HLA-DOAP06340 AC008011.2-201ENST00000538113 792 ntTSL 3 BASIC18.4■□□□□ 0.54
HLA-DOAP06340 XRCC3-210ENST00000554974 575 ntTSL 4 BASIC18.4■□□□□ 0.54
HLA-DOAP06340 ANKS3-227ENST00000592711 580 ntTSL 4 BASIC18.4■□□□□ 0.54
HLA-DOAP06340 AP005019.2-201ENST00000615104 511 ntBASIC18.4■□□□□ 0.54
HLA-DOAP06340 BX539320.1-201ENST00000623759 877 ntBASIC18.4■□□□□ 0.54
HLA-DOAP06340 SYNE2-228ENST00000639659 1290 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DOAP06340 CNTNAP3B-201ENST00000276974 3240 ntTSL 5 BASIC18.4■□□□□ 0.54
HLA-DOAP06340 SEC13-201ENST00000337354 1363 ntAPPRIS ALT1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DOAP06340 ADGRG2-202ENST00000354791 4494 ntTSL 5 BASIC18.4■□□□□ 0.54
HLA-DOAP06340 LFNG-204ENST00000402045 2058 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DOAP06340 TXNDC11-202ENST00000356957 3178 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DOAP06340 CENPN-202ENST00000305850 2481 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
HLA-DOAP06340 ZNF398-203ENST00000483892 2121 ntTSL 5 BASIC18.4■□□□□ 0.54
HLA-DOAP06340 AL603832.2-201ENST00000566195 2125 ntBASIC18.4■□□□□ 0.54
HLA-DOAP06340 HNF1B-202ENST00000614313 1819 ntTSL 5 BASIC18.39■□□□□ 0.54
HLA-DOAP06340 HNF1B-203ENST00000617272 1820 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
HLA-DOAP06340 C5orf24-204ENST00000504727 2923 ntTSL 1 (best) BASIC18.39■□□□□ 0.54
HLA-DOAP06340 TUBGCP2-204ENST00000417178 4029 ntTSL 2 BASIC18.39■□□□□ 0.54
HLA-DOAP06340 ZNF703-201ENST00000331569 3349 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
HLA-DOAP06340 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.54
HLA-DOAP06340 MPL-201ENST00000372470 1908 ntAPPRIS P2 TSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DOAP06340 C14orf93-207ENST00000397382 1986 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
HLA-DOAP06340 ST6GALNAC6-216ENST00000622357 2396 ntAPPRIS ALT1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DOAP06340 HASPIN-201ENST00000325418 2797 ntAPPRIS P1 BASIC18.39■□□□□ 0.53
HLA-DOAP06340 BCAT2-202ENST00000402551 2041 ntTSL 2 BASIC18.39■□□□□ 0.53
HLA-DOAP06340 CHIA-201ENST00000343320 1624 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
HLA-DOAP06340 NME7-201ENST00000367811 1642 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DOAP06340 UCHL5-206ENST00000367455 5327 ntAPPRIS P3 TSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DOAP06340 MEF2A-204ENST00000557785 2854 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
HLA-DOAP06340 SERINC2-205ENST00000536384 2062 ntTSL 2 BASIC18.39■□□□□ 0.53
HLA-DOAP06340 POLR2A-201ENST00000572844 2083 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DOAP06340 GCH1-204ENST00000491895 2943 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DOAP06340 SLC22A12-205ENST00000473690 2522 ntTSL 2 BASIC18.39■□□□□ 0.53
HLA-DOAP06340 HSPC324-201ENST00000411904 557 ntTSL 2 BASIC18.39■□□□□ 0.53
HLA-DOAP06340 AC099336.1-201ENST00000417053 1171 ntBASIC18.39■□□□□ 0.53
HLA-DOAP06340 Z82214.2-201ENST00000420269 531 ntTSL 4 BASIC18.39■□□□□ 0.53
HLA-DOAP06340 LLPH-AS1-201ENST00000510317 623 ntTSL 4 BASIC18.39■□□□□ 0.53
HLA-DOAP06340 NAALADL1-208ENST00000528884 973 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DOAP06340 CX3CL1-203ENST00000564948 563 ntTSL 3 BASIC18.39■□□□□ 0.53
HLA-DOAP06340 AC025181.2-201ENST00000606994 802 ntBASIC18.39■□□□□ 0.53
HLA-DOAP06340 AC233723.1-201ENST00000635921 386 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
HLA-DOAP06340 SHISA6-202ENST00000409168 7262 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DOAP06340 SNHG20-204ENST00000566583 1338 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DOAP06340 BUD13-202ENST00000375445 1793 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DOAP06340 ACE-203ENST00000413513 2237 ntTSL 2 BASIC18.39■□□□□ 0.53
HLA-DOAP06340 ARHGEF7-214ENST00000478679 1833 ntTSL 2 BASIC18.39■□□□□ 0.53
HLA-DOAP06340 CREB3L3-204ENST00000602147 1382 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DOAP06340 DGAT2-202ENST00000376262 2324 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DOAP06340 USP42-201ENST00000306177 5155 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
HLA-DOAP06340 SYT6-201ENST00000369547 4369 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DOAP06340 PDE4C-201ENST00000262805 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DOAP06340 MBD4-203ENST00000429544 2478 ntAPPRIS ALT2 TSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DOAP06340 MAP2K6-209ENST00000613873 1509 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
HLA-DOAP06340 CAAP1-206ENST00000625311 1532 ntTSL 2 BASIC18.39■□□□□ 0.53
HLA-DOAP06340 TKT-202ENST00000423516 2075 ntTSL 2 BASIC18.38■□□□□ 0.53
HLA-DOAP06340 SH3BP4-203ENST00000409212 5231 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
HLA-DOAP06340 P2RY4-201ENST00000374519 1595 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
HLA-DOAP06340 NRIP1-203ENST00000400202 7671 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
HLA-DOAP06340 TAF6-209ENST00000452041 2297 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DOAP06340 SLC6A9-202ENST00000360584 2330 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DOAP06340 AQP3-201ENST00000297991 1849 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DOAP06340 PELI3-209ENST00000618547 2508 ntTSL 2 BASIC18.38■□□□□ 0.53
HLA-DOAP06340 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC18.38■□□□□ 0.53
HLA-DOAP06340 PLAC9-201ENST00000372263 785 ntAPPRIS P2 TSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DOAP06340 TSPAN32-204ENST00000381121 999 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
HLA-DOAP06340 IGLV2-23-201ENST00000390306 502 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
HLA-DOAP06340 MDM2-215ENST00000428863 1037 ntTSL 5 BASIC18.38■□□□□ 0.53
HLA-DOAP06340 LIMS3-201ENST00000437679 1220 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DOAP06340 AC092658.1-201ENST00000505836 891 ntBASIC18.38■□□□□ 0.53
HLA-DOAP06340 AC012574.2-201ENST00000520375 443 ntTSL 3 BASIC18.38■□□□□ 0.53
HLA-DOAP06340 AC024619.2-201ENST00000581964 517 ntTSL 5 BASIC18.38■□□□□ 0.53
HLA-DOAP06340 AC068473.4-201ENST00000587527 585 ntTSL 4 BASIC18.38■□□□□ 0.53
HLA-DOAP06340 AC010641.1-201ENST00000591757 529 ntTSL 3 BASIC18.38■□□□□ 0.53
HLA-DOAP06340 C19orf38-203ENST00000592854 1060 ntAPPRIS P1 TSL 5 BASIC18.38■□□□□ 0.53
HLA-DOAP06340 CCNY-202ENST00000339497 4630 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DOAP06340 POMP-201ENST00000380842 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DOAP06340 B9D1-209ENST00000477478 1353 ntTSL 3 BASIC18.38■□□□□ 0.53
HLA-DOAP06340 DIMT1-201ENST00000199320 2859 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DOAP06340 MFF-204ENST00000353339 2186 ntTSL 5 BASIC18.38■□□□□ 0.53
HLA-DOAP06340 ROR2-202ENST00000375715 2993 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
HLA-DOAP06340 MAPKAP1-208ENST00000394063 2977 ntTSL 5 BASIC18.38■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 44.5 ms